Conserved Protein Domain Family
methan_mark_4

?
TIGR03270: methan_mark_4 
putative methanogen marker protein 4
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely linked to it. Some members have been suggested to be a methyltransferase, based on the proximity of its gene to genes of the multi-subunit complex, N5-methyl-tetrahydromethanopterin--coenzyme M methyltransferase. That context is not conserved, however. The family shows similarity to various phosphate acyltranferases. [Energy metabolism, Methanogenesis]
Statistics
?
PSSM-Id: 274497
Aligned: 7 rows
Threshold Bit Score: 253.82
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_011171290  27 VELVEDPEILIDGLLNKRYEGAVRGSLsSSKLIPILRKKi--gKFYRASILKnpFNNEIFILAPVGIDEisespEIRFNE 104 Methanococcus m...
WP_011406761  24 IKIARTNEELLNYLNNPEIDGVIRGSL-ESNIIMDLKKKy--pHIFRASILE--KDGHKFMLTPVGIDE-----CDTIKA 93  Methanosphaera ...
WP_010875870  32 VDLVHSEEEFIEELRRGA-AAYVRGSLpAANIMAELKKgg---pLNRASWIE--VGANGFLLAPVGIDE-----GRTVDD 100 Methanothermoba...
WP_011032208  69 IDTEDPEKVLSDLLVSRKVDAVIRGTAkASGTLSSLKKAlgmkRICRLALLLt-ADGTPFFLAPVGIDE-----GNTISD 142 Methanosarcina ...
WP_011447947  54 IISEHPELDLISDLFSGTLDAAIRGTLsSHHTLQLLKETagvsTLERVVLLEt-ADGSHFFLGPVGIDE-----GWTISD 127 Methanospirillu...
WP_010870888  30 VELIDNPKLLVDKLLDGEIDGAVRGSLsSSKVILYLRERi--gKFYRASILKnpFTNGIFLLSPVGIDDisedkNERIKD 107 Methanocaldococ...
WP_011019309  44 VRAKDPGRALVEDLVEGRLDAAVRGAV-SGRCVRELVDAldlpFTGRSTVLE--AEGRRVLLAPVGIDE-----GWEVES 115 Methanopyrus ka...
WP_011171290 105 KLQIIKYSSEFLKSMEM-IPKVGILSAGRLSDVGRSKKIDDSIMDAEKLL-KYVKSskykDLEIEHKGILVEEYLKEGCN 182 Methanococcus m...
WP_011406761  94 KKTIIRECSRIIKQTGH-TPKIALISGGRKQDKGRSPKIDHSIDECEQIV-QDLKD----ECNIKHYYILIEEAIKDHAN 167 Methanosphaera ...
WP_010875870 101 RFKIAVSASEFLRKTGE-EPRVGVISGGRRGDLGRSPEVDRSIHEGEFLT-SMIKD----KYRVRHYHILIEEAVADGCN 174 Methanothermoba...
WP_011032208 143 KLRMITLGAEHIRRLGV-EPAVGVLSGGRMGDIGRDRRVDRTLADGEFITgRALEL----GINTKHYTILIEDAVKE-SN 216 Methanosarcina ...
WP_011447947 128 KVSLIEKVKPLCQKFGL-SEKVTILSGGRLDDVGRHPAVDRSLADAELVA-RLSGG--------VHRGILIEEAVKD-SG 196 Methanospirillu...
WP_010870888 108 KIRIIEFASNFLKNYNI-KAKVAVLSGGRLGDLGRNKVVDETIYEAEEIV-EHFKG----NVDIIHNGILIEEYLKDGYN 181 Methanocaldococ...
WP_011019309 116 LVKLGELAARFHRRLTRrEPSVAVVSSGRLEDFGRRSEIDRWLADGELVA-RLLKEr---GMEVEHVGILVEEALER--D 189 Methanopyrus ka...
WP_011171290 183 IILADDGISGNLLFRSFALVCDMEGFGAIILN--SEN-IkYIDTSRSGSWKRYYNAVKFL 239 Methanococcus maripaludis
WP_011406761 168 VIIAPDGISGNIIFRSLVLVAGIKSYGALTLK--QEK-L-FIDTSRSQTTEGYVNAITLL 223 Methanosphaera stadtmanae
WP_010875870 175 VIIAPDGITGNLIFRSLVLVGTARSYGAVALG--FDG-I-FVDTSRSQTAEGYLRALKFA 230 Methanothermobacter thermautotrophicus
WP_011032208 217 FIIAPDGISGNLIFRTVAFLGGGDGLGAPVLM--DDY-V-FVDTSRVG--GHFTKAIMLA 270 Methanosarcina mazei
WP_011447947 197 FIVAPDGVSGNLIFRTLLFLGRGRSYGAPVLN--IPK-I-FVDTSRVN--PNYLHALNLA 250 Methanospirillum hungatei
WP_010870888 182 IIIAVDGITGNLIFRCLGLICKIPGYGAVILS--DKN-VnFIDTSRNANWERYYNAIKFL 238 Methanocaldococcus jannaschii
WP_011019309 190 VVLFVNGVLGNLTFRCLSLVAGFRSHGAPVLAalERGvV-FVDTSRAQRASGYARALRLA 248 Methanopyrus kandleri
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap