Conserved Protein Domain Family
met_CoM_red_D

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TIGR03260: met_CoM_red_D 
methyl-coenzyme M reductase operon protein D
Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown. [Energy metabolism, Methanogenesis]
Statistics
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PSSM-Id: 274493
Aligned: 8 rows
Threshold Bit Score: 215.7
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011019022  13 EVQIFPQRLLSADTTEKLLNELLErVEGIGRIVIHGPGLPKAVPFGPARGKPVKHPERRPIEVHGEKIPMKVQTGQIIVE 92  Methanopyrus ka...
WP_010870357   5 EVEIFPHRYLKASTTEKFLNKIYD-LKTVERVVIHGQPLPKVITYGPARGLPVNHTERKIIHVKGVPVELTVMAGRFWIT 83  Methanocaldococ...
WP_010869611  16 DVKIFPHRYLKAETTEKVLNEIYD-LDGIVRVIVHGQPLPKTVPFGPARGLPVNHQDRKVIKVKGEEMELRVKVGEIIIT 94  Methanocaldococ...
WP_011171500   3 ELEVFPHRYLKAETTEKFLNRAYS-LSKVQRVVIHGESLPNKVGYGPAKGTPVNHSEKKEITVKGVPVELMLQVGRLWVL 81  Methanococcus m...
WP_011405929  20 DVKIFPDRILKPETTETILNKVMK-LEGVLRILINGERLPTVVTMGPARGAPVNHTDRKTINVKGNDVPLRVSVGEIILT 98  Methanosphaera ...
WP_011033192  13 QIEIFPSRILSPETAQKLLVELSQ-VDGILRVMIQGNRLPEKVGYGPGTGEKVEHPLRKPIQIGGQVIELRVSVGRIRLE 91  Methanosarcina ...
WP_011449109   8 QCRIVTERLLKPETVEKILNKLAV-IPGIRRIVINGPSIPQKVPYGPARGLDNPHSGKATIRVGVTDVDLRVQVGTFLLE 86  Methanospirillu...
WP_010876791   2 DVQIFPHRLLGADTTEKLLNRLED-ISGVKRMVIHGQRLP-----------PEDHPDRRIISVKGHEFELQVKTGRVLLE 69  Methanothermoba...
WP_011019022  93 IE---D---EdrldDIVEEIEKICREILP-CDFEVQVGRFTRHKPTVTDYLKFGEEGv---KKLDKRLLGLVEPRARLAD 162 Methanopyrus ka...
WP_010870357  84 LS---D---D----SELDKLDEICKEMFP-FGYNLRVGKFLKDRPTVTDYIKYGEDGvfliNEMDRRLIGMVDPRSRMAN 152 Methanocaldococ...
WP_010869611  95 VE---GeklE----KIMDGIEEICKRNFP-FGYDIYVGAFTKIKPTVTDYMKYGDI-----SSIDPRLIGMVDASARLKD 161 Methanocaldococ...
WP_011171500  82 LD---D---E----SEIEKIEEICKDLFP-FGYRLTKGKFLRNDPTVSDFIKYGESAv---DDIDKRLLGATDPRSKFDS 147 Methanococcus m...
WP_011405929  99 VQldnL---E----DFVTEVNNILDETLK-FGYNVSVGVFTKTNTTVSDYMKYGQGFe---DKIDSRLIGLVDPNAKSSE 167 Methanosphaera ...
WP_011033192  92 VL---N---A----EVKENVRAVCEKMLP-FSFEFREGHFLRRKPTVTDYAKLG-------PEADPRLLGMVDPKAKINQ 153 Methanosarcina ...
WP_011449109  87 LE---T---R----DIVSQVEEACKEVFTnFSYSVKEGKFMRSTPTQVDYAKYG-------PNANEIMLGLVDPKNKTGP 149 Methanospirillu...
WP_010876791  70 IE---D---E----DTIADIKRVCEDLLP-FGYDVTPGKYIRTQKTVTDEIKYGEDL----DKVPEELIGLTDQNARLSE 134 Methanothermoba...
WP_011019022 163 RVS 165 Methanopyrus kandleri
WP_010870357 153 SVT 155 Methanocaldococcus jannaschii
WP_010869611 162 SVK 164 Methanocaldococcus jannaschii
WP_011171500 148 SVT 150 Methanococcus maripaludis
WP_011405929 168 TIR 170 Methanosphaera stadtmanae
WP_011033192 154 LVF 156 Methanosarcina mazei
WP_011449109 150 TLI 152 Methanospirillum hungatei
WP_010876791 135 RAT 137 Methanothermobacter thermautotrophicus
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