Conserved Protein Domain Family
MnmC_Cterm

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TIGR03197: MnmC_Cterm 
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain
In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein. [Protein synthesis, tRNA and rRNA base modification]
Statistics
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PSSM-Id: 274478
Aligned: 31 rows
Threshold Bit Score: 246.794
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011147392 280 TALALLRRGAQVTLYCQDVAPAQGASGNRQGALYPLLNGSNNGLEKFFTSAFTFARRQYEQFSAqGIDFDH-QWCGVSQL 358 Photorhabdus lu...
WP_011335391 276 TAASLAARGWQVSLLERHDAVAQEASGNPQGVLYLKLSAHGTALSQLIVSGFGYTRRVLETLQRg---TDW-DDCGVLQL 351 Pseudomonas flu...
WP_011135493 269 sarSLALRGWQVTLIERMPQLASAASGNPQGVLYTKLSPHLTPLTRLVLSGYAYSLRALRCLLPeDG--DW-QACGVLQL 345 Chromobacterium...
WP_011369552 285 VAYQLASQGLSVTVLEQEKAVAQQASGNLAGAIHPLVTADWNVRSQFYLKGFECSLRWLRPWFDsHSIVGQ-Q-NGLMQL 362 Thiomicrospira ...
WP_011467953 321 aahalalRGVNVTLLERAPNLANGASSNLQGLVYTRLSLSGNPLSRFNMAAQLYADRFYHSh---NFYTTCgEASGVLHL 397 Saccharophagus ...
WP_000958882 265 LAYSLSRRGIQVFLIDP-SGIAKETSGIPMAISHPHLTKIPGPISLFTLRAFRYALSFLSSFADqNF---F-EKTGLFHS 339 Leptospira inte...
WP_011713997 277 CAYACRRAGLQVTLFERHAQPGAEASGNPSGLFSPRLTAGVSLDGRFHAAAYFHALDLYAQLAQhTPEIYH-PGRGLLQM 355 Magnetococcus m...
WP_011381242 250 aasalaSRGLIVELLESHT-LGAGASGNPIGILHARLSAGMNALHRFVLASYGHALALLDEKIPvDGVMRS-E-CGELQL 326 Nitrosospira mu...
WP_012030588 265 TAYELAQRGKVVHVYHDPENPC--ASAVPVAVPFFLPGKTDTPMRQFHLAAWHDLCRELKCCPQgIV------DRMPIAL 336 Dichelobacter n...
WP_011182705 277 CAWSLAQRGHRVTLVDQ-SQPLSGASGNPLALLNPKLCPITQCHDHLMVLCWQYARRFYQNF------EAF-RLIQVNQL 348 Acinetobacter s...
WP_011147392 359 AYDEKSSKKIEKMLa-TEW--PNELAIGMNCHQLSEKCGLDIHHHGIHYPQGGWLCPAELTKAATELAqQQGMLCCFNHQ 435 Photorhabdus lu...
WP_011335391 352 AFNEKERERQAQLAs--aF--PEDLLQWLDQPEAQARAGVGLAHGGLYYPEGGWVHPPALCQAQSAQP---GVTLLPHQE 424 Pseudomonas flu...
WP_011135493 346 AHDGKEAEKQQALAe-LNL--PESVMRPLDRDAASELAGTDLPCGGLFFPQGGWVHPPALVRQLADHP-NI--VIKTGRT 419 Chromobacterium...
WP_011369552 363 AMTETMLQRLQEALtrVGL--PKSFAYWCDADQASDLIGQKTDHEGLFFPEAGWVQPTSVVTQCLAHE-AIALKQ--EEA 437 Thiomicrospira ...
WP_011467953 398 ATSNAIEKQLRNIGeqHAStdPNPIFNWVEQQDTEQAVGVSTSTGGLFIRNSGWLNPVQLCHALTNHP-RI--TKLFNSD 474 Saccharophagus ...
WP_000958882 340 VTQEMDSERLQKGIenHKL--SEEIVFWKPIASKFQNGDFLENEPGVFFRNGFWTRPESIAKKCAEQP-GVEF---IKGT 413 Leptospira inte...
WP_011713997 356 AESEADVQRLQQALfhSAW--PPQHAQWWDAATASQQLGTPLPRGGLWHAQAGALNPSVLCAALLAD-----VTAHYQTE 428 Magnetococcus m...
WP_011381242 327 SFSAEEARRIGKLAt-LDW--PAHVFRPVDAAEASALAGIELSYGGLWFPGSGWLAPPQLCVALLGSQ-AI--TLYTGRT 400 Nitrosospira mu...
WP_012030588 337 AVAEESLARR-----------KESLADLFEPEQA------DIEAKKLYFYQAGALDTPRLLTYLLADK-NI---TQYAQK 395 Dichelobacter n...
WP_011182705 349 AL--KASDSLLNLAe--qY--PKDVLDAHSAQQSP----LETQYDYLTLHYAGVISPQLFCNQVLQHP-LIEFKQFKINQ 417 Acinetobacter s...
WP_011147392 436 VTALSHNQHG----WQLHLmHQGQSLN----AQhkTVVIANGHHLPQ-----FEQTEKLPVTAVRGQVSHIPTTTDLSQL 502 Photorhabdus lu...
WP_011335391 425 AVELRKVGDQ----WQAFD-GERLIAT----AP--VVVLAGAAEIKR-----FAQSGELPLKRIRGQITRLAQTAQSQAL 488 Pseudomonas flu...
WP_011135493 420 ALTLDYDPAQr--sWTAGD-EQGPLAV----AS--VVVLAGAAETAQ-----FDSTRHLPLKKIRGQITSIPASEESSRL 485 Chromobacterium...
WP_011369552 438 VVSIQPVPDQnsqdWQIMT-PNSTYQ-----AD--VVVVATGALNGD-----LNEQLNLPIRPVKGQVSHFKAADLKGAL 504 Thiomicrospira ...
WP_011467953 475 AAQLQQDAHGq---WFALT-NDGHKLAs---AD--ITVICTARDAKH-----LAQTAYLPMRNIRGQVSHLSSHGLSQRL 540 Saccharophagus ...
WP_000958882 414 ASRIEQDGTS----WKLLIqESGHEIV----AN--SIIFCNSHSIGKliaslFEGEEPFPIRKVRGQLISLKETEKSSRI 483 Leptospira inte...
WP_011713997 429 IVRLAPQPEG----WTLHT-AQRHYGT----FD--AVVIAAGATAPL-----LYPEAEIPNTAVQGQLSILPAANPLNQ- 491 Magnetococcus m...
WP_011381242 401 VKSLTPTSHG----WRVQA-EDQRKQAwsleAE--IVVVCTGYQVKS-----LPALANLPLTPVRGQLTLIPATTASQNL 468 Nitrosospira mu...
WP_012030588 396 IAQLTPQAEG----WRI-----GEQI-----YA--RVVLATSWQEQL-----LPNALQKRMRTVRGQATFFALNA--PVA 452 Dichelobacter n...
WP_011182705 418 IIEI--DGTV-----QLLS-SEQAILE----SN--AAIVCCARESGK-----LFE-QYPTLKPIRGQVSWFEQHTFPFAP 477 Acinetobacter s...
WP_011147392 503 QNVLCYDGYMTPANpaNQH-----H-----C-IGASYQRHRL--DNEYSE---TEQQENRDRLLKCLSD--AEW---VNQ 561 Photorhabdus lu...
WP_011335391 489 ATVVCAEGYVAPAR--WGE-----H-----T-LGASFDFSSD--DLTPTT---AEHLGNLAMLEEISTD--LVArlhVSE 548 Pseudomonas flu...
WP_011135493 486 RTVLCGEGYISPAR--GGR-----H-----C-LGATFKFDTD--DLGVND---GEHAENLAMLAELAPS--LRA---SLD 542 Chromobacterium...
WP_011369552 505 KTTVTHRGYSVCGD--FGA-----QspyaaI-SGATFEAPDL--SPILSD---ASHIENQRLATEALPN----W---LA- 563 Thiomicrospira ...
WP_011467953 541 HASVCGAGYIAPAQ--SGI-----H-----C-AGASFNLHEN--TLDLRE---EDHQFNIDNLASMSKS--LTF-----N 595 Saccharophagus ...
WP_000958882 484 SNILCAEHYLTPSI--LGE-----H-----I-LGSTFDEFDL--NPLPQK---KDTDRLLEFVQNKYPS--LNF---DSS 540 Leptospira inte...
WP_011713997 492 -HALVFGGYLTPPY--QDEqgqlcQ-----V-LGSTYRPWDDlsDCSWSEcqpEAHQLVWQQLNETLPQlgQQW---L-- 557 Magnetococcus m...
WP_011381242 469 RTIVCGSGYFSPAV--AGR-----H-----M-VGATHRFNDT--SINLNV---SEHAENLSRLREISPV--LRR---LSD 525 Nitrosospira mu...
WP_012030588 453 GEIFCAERSFIPLP--DRV-----H-----MhVGSSYSVNDC--DRMRRT---QDDAEHAEACRARFPQ--HA------- 506 Dichelobacter n...
WP_011182705 478 DQAFSYGGYCMQLH--PQQ-----L-----I-LGASFHPQRD--DDEVLL---EDHVHNFNLIHSVFPA--YAQ---TL- 533 Acinetobacter s...
WP_011147392 562 ------VD-VSAKQSRQGIRCVIRDHMPMVGNVPDLNKIMTDYQDLPEKIRTgsPITdAPCYSNLFVIGALGSRGLCSAP 634 Photorhabdus lu...
WP_011335391 549 ------RD-AESLQGRAAFRCTSPDYLPMVGPLADREAFTRIYAALSKDARQvpDMP-CPWLDGLYVNSGHGSRGLITAP 620 Pseudomonas flu...
WP_011135493 543 ------RDaPEHLDGRAAFRCTSPDYLPLVGPAVAARDFVHAYRELARDATLrpATA-CPWAEGLYVNAAHGSRGLITAP 615 Chromobacterium...
WP_011369552 564 -------D-STDMAGKVGFRPTTPDHLPLIGAVPDFEWMKTAYFEQSHTHAVyrYAE-QRYQPGLYVSNGHGARGLMSVF 634 Thiomicrospira ...
WP_011467953 596 ------PP-LTTLDGKVGFRATTPDYFPIVGPVPIRDEFCERFAGYRKRAATpiPQT-GPYYRGLYVSVGYGSRGLAYTP 667 Saccharophagus ...
WP_000958882 541 ----------CVLIEKVGLRAQTPDRLPILGPVFDPREFRKIYKEIDLPKNRnkKFPnLKTIQGLYVFGGLGSRGILSSF 610 Leptospira inte...
WP_011713997 558 ---------GPARQGRAALRAAMKDHFPLFGPLINPSAYRTNYATLYQGKRVslAKP-AVYIDGLYLIGGLGSRGLLTAP 627 Magnetococcus m...
WP_011381242 526 evsqdiRQ-LEQLDGRTSIRGSVPGAMPLVGEL----------------------------LPGLYTSLGHGTRGLITAG 576 Nitrosospira mu...
WP_012030588 507 ---------IQLERAFVGIRAASRDYLPLIGAVVRAESVYQRYQKWSKDRNIpiNEE-IDYYPQLYMHSGLGSKGTLTAF 576 Dichelobacter n...
WP_011182705 534 ------PP-VEEWHGRASVRAQSPDYFPLVGQLQD--------------------------HSKLFTLAGLGSKGYLFAP 580 Acinetobacter s...
WP_011147392 635 LSAEILAGQIFDEPLPLDNEILATLHPNRFWI 666 Photorhabdus luminescens
WP_011335391 621 LSGELLAAWLDNEPLPLPRSVAEACHPNRFAL 652 Pseudomonas fluorescens
WP_011135493 616 LSGEILASLLEGEPAPLPADLMRAVHPSRFLL 647 Chromobacterium violaceum
WP_011369552 635 LAAEMIGAMVTGDAQVMPKSLYHAVHPARFAI 666 Thiomicrospira crunogena
WP_011467953 668 LATESLCHSIFGELQPIATETLLHLHPARFLF 699 Saccharophagus degradans
WP_000958882 611 LGSEIMASLILGEPVPVESSVLEHLHPARFLY 642 Leptospira interrogans
WP_011713997 628 LFGACMAALLSGGPLPLEADLWCAVHPARLLV 659 Magnetococcus marinus
WP_011381242 577 ISAELVAATACGQLLPLPLSVVNALSPVRRAS 608 Nitrosospira multiformis
WP_012030588 577 LGAKILAAMMLGDPLPIDRKLLTSIVPTRFLV 608 Dichelobacter nodosus
WP_011182705 581 LNSEILVAHILGEACPVSANLLQKLNPQRFLK 612 Acinetobacter sp. ADP1
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