Conserved Protein Domain Family
DNA_S_dndE
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TIGR03184: DNA_S_dndE 
DNA sulfur modification protein DndE
This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases. [DNA metabolism, Restriction/modification]
Links
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Statistics
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PSSM-Id: 274474
Aligned: 14 rows
Threshold Bit Score: 120.525
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
ZP_01265059    8 LRTSTHLKNILTRVRSRTGIQNmNVICRWGFCLSLKQTSLpRDIDEKLDG-V-TIDYDTFAGKNKIIYTQLLV--NNMVK 83  Candidatus Pela...
ZP_00517733    8 IGLSQTAKEQLIKLKRYTKIEQwNILCRWGFCRSLAEPSIpSPVPIILDSnV-EMTWRVFGGEMADILLIALK--QRCYK 84  Crocosphaera wa...
ZP_01306314    6 MKITDNAFHSLRRFHSNTGITI-NIGARLAFFKSIESGYTyDGREMEPRQr--SLSKHVWLGELEQVVELLLK------D 76  Bermanella mari...
WP_011318996   8 IKLSQTAKDQLLKLRRNTKIDQwNILCRWAFCRSLAETTPpSPVPIPQDS-NvEMTWRVFGGEISDVLLLALK--QRCHN 84  Anabaena variab...
WP_011613143   8 IRLSQVAKEQLTKLKRNTKIDQwNILCRWAFCCSLAELSIpSPVPIPADS-NlELTWRIFGGKFADILLVALK--QRCHN 84  Trichodesmium e...
WP_011329735  11 IKLSEKQKQQLVRLKSKTGIENwNVLCRWALCMSLAEDSIpPVEEIPSDS-NvEMSWKVFAGEYADVYLAVLR--EAYQK 87  Pseudoalteromon...
WP_011332376   6 IRLTAAAKVQLSTLKRRYGLEHnNTICRYALCMSLATPGElIQEELSFLG-GlEIDWKTFTTGNEDFYINLVK--AWSEN 82  Pseudomonas flu...
WP_011578997   6 LRISADATSKLRSLRQRTGVTP-NLLCRMAIMTSLEEGPL-GGAAIPDED-GsEFNAYTLTGEYGALIAAFLRfvEEGQE 82  Chelativorans s...
WP_011400710   6 MKISEKAFTSLRRLQNNTGLTV-NIGARLAFFASIERGFTwNGDDIQLTQr--ELDKYSWLGDHGDIIEMLLK--Q---- 76  Hahella chejuensis
WP_001109533   5 LKISKRVSDKLKELQAPTNLTP-NILARLAVGLSLTDPTFpEVLTDKEAG-GlEINRHTLTGEYDFIYKCLIT--Q--HA 78  Bacillus cereus

ZP_01265059   84 HNVEITRRSLAKYLNSHVNRGINIIYNN 111 Candidatus Pelagibacter ubique HTCC1002
ZP_00517733   85 DGLGTDKETLITQFKLHLHRGIGYLAGD 112 Crocosphaera watsonii WH 8501
ZP_01306314   77 KYPDMHQKELYKAWNAHVEDGSASIEGK 104 Bermanella marisrubri
WP_011318996  85 DGYPTDKETLATQFRLHLHRGIGYLAGD 112 Anabaena variabilis
WP_011613143  85 DGIGIDQETLASQFRLHLHRGIGYLAGD 112 Trichodesmium erythraeum
WP_011329735  88 QSAHLEGVHFGDFLKLHLNRGISFSLSF 115 Pseudoalteromonas haloplanktis
WP_011332376  83 NAQHVDDESIKRYITLHVHRGLSFLSGR 110 Pseudomonas fluorescens
WP_011578997  83 PDPPLEDEILLDRLRGHIHRGVGTLSVR 110 Chelativorans sp. BNC1
WP_011400710  77 KYPNLDNKDYYKAWAIHVDDGAIVIENK 104 Hahella chejuensis
WP_001109533  79 GREVSDNEYFPTLFNAHLERGINLLDSE 106 Bacillus cereus
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