Conserved Protein Domain Family
cas_Csc3

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TIGR03174: cas_Csc3 
CRISPR type I-D/CYANO-associated protein Csc3/Cas10d
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Statistics
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PSSM-Id: 274469
Aligned: 4 rows
Threshold Bit Score: 1171.23
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011320851   93 AADQSLNTHLLNGLFPANLIerrLQQLDTTvrRVVKERErrLVIAGFILHDFEKF---PDVPNDCRKlPLAEHRPIIDAK 169  Anabaena vari...
WP_011153680   73 KGDQTLAAHILNALLTTWNV---MQELEFP--LNDIERR--LLCLGITLHDYDKHchaQDMAAPEPD-NIQEIINICLEL 144  Synechocystis...
WP_011448845   62 KTDQPMINHVRNGIQALIELnktLLQSGSAhyLPVSKLR--EVIALFSIHDLHKTigkD--WRDQFDlNEDEVMSFAHA- 136  Methanospiril...
WP_011323344   90 KVDQSMLNHTRNLVYFLHQLarqIENTDLPs-ITPKKLR--HLVALAVAHDYHKLreeDENPNERFDiKIKELEPFIEE- 165  Natronomonas ...
WP_011320851  170 IRQLGLDKFINpenseAYQEYIDDLLCMAYNAQSRWDTNW---NFSEFGLNPVLRDRTL-RQLSGLTLLADSLASIvKHP 245  Anabaena vari...
WP_011153680  145 GKRLNFDEFWA-----DWRDYIAEISYLAQNTHGKQHTNLissNWSNAGYPFTIKERKLdHPLRHLLTFGDVAVHL-SSP 218  Synechocystis...
WP_011448845  137 ---IQADIFAPaltpnD---------FLSVAVA----------THPTQGFHGDLSHTFI--TYKNWVLLADIFASL-EMP 191  Methanospiril...
WP_011323344  166 ---IGLDEFSStp--dDPESELSIRTFRSCAVD----------HHDTENANSTRVTTTW-REYRPLIRLADSMASS-ATP 228  Natronomonas ...
WP_011320851  246 QDAEHSKLKEVLHFL-SDGQLKLT--YHSIAENRGVLTNVVNNALIQAHT-SLNtdehtyYEPLLYLPTGVIYLAARHAP 321  Anabaena vari...
WP_011153680  219 HDLVSSTMGDRLRDLlNRLGIEKRfvYHHLRDTTGILSNAIHNVILRTVQ-KLD------WKPLLFFAQGVIYFAPQDTE 291  Synechocystis...
WP_011448845  192 --VVTEGMKKHIAFIdAKKTFF----YHTFSESIGLLSNVVHAAVLEWAK-QYA------LFPLLFFEKGVIYLGDKNSR 258  Methanospiril...
WP_011323344  229 EAATNNRVQDRFREAfPSGNFELA--YHQTDHVSGVFTNLLNKVVSEYLQeEYD------YQLLTMYQDGCVYLTPAELD 300  Natronomonas ...
WP_011320851  322 PISTEDLPDRVVDNIKSLCAGQLRLRQTGFGR-----------DGKGMKYAEYYNLFFESPGLMQVALDATLRILNPNKD 390  Anabaena vari...
WP_011153680  292 IPERNEIKQIVWQGISQELGKKMSAGDVGFKR-----------DGKGLKVSPQTSELLAAADIVRILPQVISVKVNNAKS 360  Synechocystis...
WP_011448845  259 FEFTQA---SQIEEIYQELKKKIQSSHESLSRpeklqkyiqvqGSKGLFSVEESFFFYSGIHTVIKAFLAAAVMTSEKDN 335  Methanospiril...
WP_011323344  301 QPETDE---DIVAAITSRLGDSIGDSHPSYNDidqlrsnfsivGAQGLYSLNEPDFFYAGSGKMLQAVVRKGVTDGDADA 377  Natronomonas ...
WP_011320851  391 SVA---KSRSENLikfqqqGVLCADYDFKFDD------------------------DiRI-----DQIAEFGDLVS--RK 436  Anabaena vari...
WP_011153680  361 PAT---PKRLEKL------ELGDAEREKLYEVa-----------------------DlRC-----DRLAELLGLVQ--KE 401  Synechocystis...
WP_011448845  336 SGNfeiDTSTPSL------TLNKSDLEMQYPPaevidvpahfiksisvdgnvipvsDvRIichgeERKAKKYTLVP--DS 407  Methanospiril...
WP_011323344  378 SAT---DAATESM------ELLEAELGTKFEKt--------------------------------EQQYGLGRFVNtiKS 416  Natronomonas ...
WP_011320851  437 IWdetvnriedirkkdkkLPA--------------------VPALDlthkvae---------------------fwnlta 475  Anabaena vari...
WP_011153680  402 IF----------------LLP--------------------EPFIE---------------------------------- 411  Synechocystis...
WP_011448845  408 VFvgeeeifglititgigLMPsmvgyrshilsdfgvdtgwdESIIPlaravsgirkdvitelikagslptddplleacrm 487  Methanospiril...
WP_011323344  417 WFv--------------------------------------DPLLPsdrtandl-------------------iratvta 439  Natronomonas ...
WP_011320851  476 YLPQIREIQHINeSLKENKLKg--nTGGVPYEWYYLAAKYLEHHpgi---esVRETCQQVIQYFTGLISPIISq--YKLP 548  Anabaena vari...
WP_011153680  412 WVLKDLELTSVI-MPEETQVQ----SGGVNYGWYRVAAHYVANH--------ATWDLEEFQEFLQGFGDRLAT---WAEE 475  Synechocystis...
WP_011448845  488 FQTNDDLTQKMVtYASENRGQdhhsVGGFWNYSYAIARDILDREvngiafsqIA-SIQEKISYLNTLVDEYLStisSENL 566  Methanospiril...
WP_011323344  440 FGLSDELAEDLVaLSEETTSAl--tSGGKWEYSYAIAQGLLDRHgtgpviptVEDEI--VMTLSDGFAALVEDd--SDWQ 513  Natronomonas ...
WP_011320851  549 DGWDDLRLWVSRVVMLPNTNQEASAKTQ---VDTFLAELNNYnAAKKPGRGKQ-LICSISHSAYTVTEQMESA--VLFTP 622  Anabaena vari...
WP_011153680  476 EGYFAEHQSPTRQIFEDYLDRYLEIQGWesdHQAFIQELENY-VNAKTKKSKQ-PICSLSSGEFPSEDQMDSV--VLFKP 551  Synechocystis...
WP_011448845  567 EKFESAILYPYKEKLLVWLCENLSINGSm-lYGSFENKTNKFkAYCDGT-----GICRLTNDTPYDKERKTTSkdVSMLK 640  Methanospiril...
WP_011323344  514 TRIQNAHAGDMATEVQAFIGETLRIGGGn-lILT-SATVDTYdEYVKSSRGKTcTLCSRGVAVGGNLGPMKSKqsLTTLQ 591  Natronomonas ...
WP_011320851  623 QVYTNKQMLGGSNA-KRNISSIAGVEMMLRQILMNQTQAvgkRFEDGKYRYLYFYPTYYFTPETNKFLQKAYNGIAQTRF 701  Anabaena vari...
WP_011153680  552 QQYSNKNPLGGGQI-KRGISKIWSLEMLLRQAFWSVPSG---KFEDQQPIFIYLYPAYVYAPQVVEAIRELVYGIASVNL 627  Synechocystis...
WP_011448845  641 YTFSNRVPIGSSEP-SLYVSVPVQIELGLRSIGHGIRKG-------SDKIYFRLIPDYHFSHTTASIFSQFAN-----YF 707  Methanospiril...
WP_011323344  592 GGFSNREMVGGMKRdKLLLCSICRIEFSLRETAASRR--------DGGRLFFHLVPDYFYTPYSWRLYSRLVN-----RF 658  Natronomonas ...
WP_011320851  702 dTSVRNHFISKDLQ-ANLEREKYqsvdaflIDENLEREKDRTFKLSypdDQPLTFYF--MALPPGRDSTDTESWIMPSWL 778  Anabaena vari...
WP_011153680  628 -WDVRKHWVNNKMDlTSLKSLPW-------LNEEVEAGTNAQLKYT---KEDLPFLA--TVYTTTREKTDTDAWVKPAFL 694  Synechocystis...
WP_011448845  708 dGDSGTRVLDLARE-FLREDVPSedsiielLIAETGRKNICQYAGLgffYQNSTFDF--V--FNKKRNGDGEYWFFGSYL 782  Methanospiril...
WP_011323344  659 tGENRVRLGRLAERvFDIDSLEEftgvmdeLTQPEGNGRTMIESLSqefDRNRQFGAqtVGYFKNPDN-DTEFQFFGAFL 737  Natronomonas ...
WP_011320851  779 AFAFPMILDVKTVVSESPIPPFNDGAEFEESVFLDSAPHAFRALVRRDRFRLDYIlegwddngiqyPAPLNVLTAAYAIH 858  Anabaena vari...
WP_011153680  695 ALLLPYLLGVKAIATRSMVPLYRSDQDFRESIHLDGVAGFWSLLGIPTDLRVEDI-----------TPALNKLLAIYTLH 763  Synechocystis...
WP_011448845  783 ALILAYVTGCRVVAGENPIC-MTSGDEFSEFVLL-EAPHVAVKRIFSDRIRLSDL-----------KKTLMTASLIISMG 849  Methanospiril...
WP_011323344  738 ALTVSAYTGMRVYLSSSPVPEMRS-RDFPEFAKI-GSGFTQVTSFYGETVSLTSL-----------QSELQSAAAVVKLG 804  Natronomonas ...
WP_011320851  859 LDVNARQGKsgydANWGRFTELAKDFETSPLYVFSYLNRWVR--NQGIETARIEKIRLYayhf-----ypcFDPYVQYDM 931  Anabaena vari...
WP_011153680  764 LAARSSPPK----ARWQDLPKTVQEVMTDVLNVFALAEQGLR--REKRDRPYESEVTEY------------WQFAELFSQ 825  Synechocystis...
WP_011448845  850 YEIR---------MDDAAFVRFLQTFRNHPFPGSTLLKQIRRvyEQDKKKGGMGGFVNSargwrkvdgeiiRSEYPGFIF 920  Methanospiril...
WP_011323344  805 YAIQGND------RNDSLFAKYLRTTRNELLPGSYLLKRAVQ--TSD-EGPYIPALMRYav---------alDQRNAIRQ 866  Natronomonas ...
WP_011320851  932 DTKTLTVKSEsslnHPKNLTELYRRFYRANKRYNPKSNAVLKPIDIAAETILKAESSvFHGETLVVGVAAEVFRLMDRVH 1011 Anabaena vari...
WP_011153680  826 GNIVMTEKLK----LTKRLVEEYRRFYQVELSKKPSTHAILLPLSKALEQILSVPDD-WDEEELILQGSGQLQAALDRQE 900  Synechocystis...
WP_011448845  921 QAVKLDTFGEnp-mAVASIHELARLGLSVAIPRNYDPHKVEKLFRESVKAILGKRGSqYPREDYVDAVSGRLLKMIKRA- 998  Methanospiril...
WP_011323344  867 SNSQMTDTPHn---RISTLAELAYDAIRPASGHGRKPHRVERVFRESVKAV-SKTGQqLDQEDYKMCVSGRLQKMIDRQA 942  Natronomonas ...
WP_011320851 1012 AST-----AEGRWVMSKREEE-----RQAVLDFAKYFVIEVFEKAFAGDRARLAGRQLNLIRDtCEFLYRL 1072 Anabaena variabilis
WP_011153680  901 VYTrpiikDKSVAYETRQLQE-----LEAIQIFMTTCVRDLFGEMCKGDRAILQEQRNRIKSG-AEFAYRL 965  Synechocystis sp. PCC ...
WP_011448845  999 --------GDDQFSRTPGLYD-----FSLIVSFAEYFVDHIFYQVASGDPGKLKRAANDLADGfYSATLQL 1056 Methanospirillum hungatei
WP_011323344  943 --------GDAVYPVSAEESDagtplQERIEEYAAYFVDEILYGIANGRPSQLKRLENNLADGfFGATLRA 1005 Natronomonas pharaonis
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