Conserved Protein Domain Family
tRNA_sel_U_synt

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TIGR03167: tRNA_sel_U_synt 
tRNA 2-selenouridine synthase
The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene. [Protein synthesis, tRNA and rRNA base modification]
Statistics
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PSSM-Id: 274463
Aligned: 30 rows
Threshold Bit Score: 366.149
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011296491  14 SGTPMMDVRAPLEFARGAFPGTVNLPLMDDEERHQVGLCYAEKGQHAAIELGHRLVWGALKAtRI-AQwaDFARAHP--D 90  Cupriavidus pin...
WP_011048600  15 DYDTVIDVRSPAEFAEDHLPGAINLPVLDNEERARVGTIYKQQSPFLARKLGAALVFRNAAS-HV-EQslSHHEGHW--R 90  Ruegeria pomeroyi
WP_010941848  13 DTHLVVDVRTPLEYEEDHLPGAINVPLLTNEERVEIGTIYKQTGPLEARRRGLHLTAHRFPA-MV-GEiaRAAAGRP--- 87  Geobacter sulfu...
WP_011344083  13 KNPVFVDVRSPKEFIEDHIPGALNLPLFSDWEREVIGKIYKFQGVSQAKLAGLNFLSPKLPR-MV-NEilKYKEQG---D 87  Carboxydothermu...
WP_011647483  15 SFDEIIDVRSPGEFQDDHVPGAINLPVLDDEERALVGTIYKQESAFRARKIGGALVAKRAG---L-NIerHLLDKPG--S 88  Hyphomonas nept...
WP_011339449  15 GFDDVIDVRSPAEWQEDRVPGAINLPVLDNEERARVGTIYKQVNPFSARKIGAALVARNAAR-HI-EEvlADRPGGW--R 90  Rhodobacter sph...
WP_005812887  15 KDIVLLDVRSEGEYEEATIPGALNLPLFSNEERAMIGTTYVQVSPALAKEQGLAIAGPKLDG-LY-NQarQWSKGRP--- 89  Desulfitobacter...
WP_011464708  17 eFDTVIDARSPGEFDEDHLPHAVNWPTLNNEERRDIGTLYKQVNAFEAKKRGAAIAARNIAA-HI-Er--AVIDKPKdwQ 92  Albidiferax fer...
WP_011187942  31 GDYLVVDVRTHAEFIENSLPGAINIPLFDEMERSVIGTLYKQVGRQEAVQAGFEIVHPKLSA-IV-ESfePYRQRK---- 104 Desulfotalea ps...
WP_024266087  14 NFSFLIDARSPREFLHSHLIGALNFYALNDEEYQEIGTIYK-KNQALAKAMGASYICQNTAK-HIlEItqNFRIGEK--- 88  Campylobacter j...
WP_011296491  91 --GYLYCFRGGLRSQIVqQWLRDEAGIDYPRVTGGYKAMRGFLIDVIEQAAAKQ-----DFLVLGGLTGTGKTDVIAEVP 163 Cupriavidus pin...
WP_011048600  91 --PLVYCWRGGQRSGSF-TWMLQQIGWRAEVVSGGYRTYRRLVNRYLYEDPLPH-----RLVALDGFTGTAKTEILARLP 162 Ruegeria pomeroyi
WP_010941848  88 --ILVYCWRGGLRSKTV-VSILDLAGFDAVQLQGGHKAFRHLVLSSFDPFTPPA-----PLVVLHGMTGVGKTTFLLQLA 159 Geobacter sulfu...
WP_011344083  88 --VVIYCWRGGLRSFVL-AEILRMVDIYVYRLEGGYKSYRREVVKFFETVE-NL-----HPIVLYGMTGVGKTKILENLQ 158 Carboxydothermu...
WP_011647483  89 yrPLVYCWRGGMRSGAF-ATILKQIGWRAEILEGGYKSYRRAVVDLLYAPGSPAevlarRIIVVDGNTGTAKTDLLHRMA 167 Hyphomonas nept...
WP_011339449  91 --PLVYCWRGGQRSNSF-AMILGQIGWRVEVLEGGYKSWRGLVVQELYDRPVRA-----PVVVIDGNTGAAKTEILTHLA 162 Rhodobacter sph...
WP_005812887  90 --VVLFCWRGGMRSKSL-ATVLGLMGLPVYRLQGGYKAYRHLVHDYFSR-EFPF-----KVVVLRGNTGVGKTELLKRLR 160 Desulfitobacter...
WP_011464708  93 --PLAYCWRGGQRSGAL-ALILSQIGFRVTLVEGGYKAFRAAVVQDIPRLVSGL-----DLRVISGTTGSGKTRLLQALS 164 Albidiferax fer...
WP_011187942 105 --LLISCARGGMRSRAV-VNLLAGQGFNIAQLEGGYKAYRHTVLDRVKNFAPE-------MIVLHGMTGVGKTRIIEKLS 174 Desulfotalea ps...
WP_024266087  89 --VGIYCSRGGLRSKSI-AVILSELGFRVVRLKGGFKAYRTFVTHYFEN-EINF-----DFFALCGNTGCGKTELLEQLP 159 Campylobacter j...
WP_011296491 164 AA----VDLEGLACHRGSAFGRRa-QPQPQQIDFENSLAIDVlqRAEAGYR-ALVVEDEGRFIGGRDLPKVLWQRMQASP 237 Cupriavidus pin...
WP_011048600 163 ALgvqmLDLEALANHRGSLLGARp-GGQPEQKAFESALAAAL--CRLDPTR-PVVVEAESSRIGERILPPSLWAALCAAP 238 Ruegeria pomeroyi
WP_010941848 160 RAghavVDLEGLARHRGSAFGELglRQDISQKRFETLLWDAF--RRLPAGC-PILLEGESRRIGRLTLPGNLYDVMRGSV 236 Geobacter sulfu...
WP_011344083 159 RQglpvLNLEKLANHRGSVFGHLglEPQPSQKFFESKLYEVL--KDLQG-I-PFLTEGESQKIGKLFIPRGLFKKMQKAP 234 Carboxydothermu...
WP_011647483 168 ARgaqvMDLEGLAGHRGSLFGGLd-ACQPSQKTFDSAIARQL--VMFDPAR-PIFVEAESSRIGRLALPNVLWSLMRAAP 243 Hyphomonas nept...
WP_011339449 163 AFgvqvLDLEGLANHRGSLFGALa-GGQPAQRGFESRLAVAL--ARLDPTQ-PVVVEAESSKIGEIRLPPGLWKAMQAAP 238 Rhodobacter sph...
WP_005812887 161 ADgypaIDLESLANNRGSVFGSVglGSGPSQKSFEAALYEEL--RMLADFP-YIIVECESKRIGRINLPTNVYEAMKMGP 237 Desulfitobacter...
WP_011464708 165 EQgaqvVDLEALARHRSSVLGAIpgQAQPTQKRFDTLVWQAL--RALDRTR-PVFIESESKKVGNVAVPTALIEAMRQSP 241 Albidiferax fer...
WP_011187942 175 PS----IDLELMANHRSSLFGALd-REASNQKGFEAAFYQKI----EEGGQePFFVEGESRKIGQVFMPDRFAVAMKQAR 245 Desulfotalea ps...
WP_024266087 160 QA----INLEKMANHLGSSFGDIl-GKQPTQKAFEAELFHNI--QNLENFA---FIESESRKIGDIILPLKFYEKMQKAF 229 Campylobacter j...
WP_011296491 238 MVWLEASFEERVERVLRDYvlglaaehieqlgpvAGFEAYAT-RLRDAMAAISPRLGSERYGRLSALLEQaltsqserge 316 Cupriavidus pin...
WP_011048600 239 RIEIEAPVAARSAYLTAAY---------------DDILSDAE-TLTARLDPLRYHRGHAVVEGWLALVAA---------- 292 Ruegeria pomeroyi
WP_010941848 237 KLWCEASVATRVARLTEEY----------------GRPEYRD-GMAGALERIRKKLGGDNYEAIKGHLDR---------- 289 Geobacter sulfu...
WP_011344083 235 VVLLELPEEKRIENLMFEY---------------KAEKIDIE-LFIKALQSITPYLGRAKVEKLIEDLRM---------- 288 Carboxydothermu...
WP_011647483 244 KVRLEASLSERGAYLALAY---------------ANIASDRD-RLSRTLDLLKPYHAADRLKTWHALAAE---------- 297 Hyphomonas nept...
WP_011339449 239 RIEVAAPVAARAAYLVRAY---------------RDLVEDGP-RLAAVIDLLRPVHPAKRIEEWHAHAAA---------- 292 Rhodobacter sph...
WP_005812887 238 QILIYDSVQHRVERLIKEY---------------TQYPHADL-EIKSALGRLTKNLGHKTIAQYSALLEQ---------- 291 Desulfitobacter...
WP_011464708 242 CLNLVLPDAERVALLMEDY---------------SFFVSDVE-SFCARLQVLTEFKGKVLVQGWQEQVRA---------- 295 Albidiferax fer...
WP_011187942 246 MVFVTASMETRVQRIIEDY---------------PMDDPQVRsKALAVVKSLRQRLGGKIVDQLSLLLQR---------- 300 Desulfotalea ps...
WP_024266087 230 KIYCFCSLENRVRRIQKIY---------------Q--EKMTPlKFQQCVQKISPYISLNLRQDLLQSYER---------- 282 Campylobacter j...
WP_011296491 317 tAPHRAWIEVLLRDYYDPMYAYQEEKRAARV 347 Cupriavidus pinatubonensis
WP_011048600 293 -GDKHGVTRALMEQHYDPAYRKSRASHAVQV 322 Ruegeria pomeroyi
WP_010941848 290 -WEMEPFMEGLIRHYYDKLYYKTRDWVEDAV 319 Geobacter sulfurreducens
WP_011344083 289 -RRFYDFTKTLLLDYYDPLYKKSTAYlqnik 318 Carboxydothermus hydrogenoformans
WP_011647483 298 -GRMEDLARELAAHHYDPKYARQRARDLRPe 327 Hyphomonas neptunium
WP_011339449 293 -GRFEELAADLMQRHYDPRYAKHRARSAPPR 322 Rhodobacter sphaeroides
WP_005812887 292 -GNLEEFTEGML-KYYDALYAYPNHPSNDYD 320 Desulfitobacterium hafniense
WP_011464708 296 -GNIAPVVQALLTQHYDPTYLQSMQRNFLRF 325 Albidiferax ferrireducens
WP_011187942 301 -DDLSEFVHILLTDYYDGRYGNCMLEYNYDl 330 Desulfotalea psychrophila
WP_024266087 283 -KEWQKLIVMLL-EYYDKTYKKPDKIDLELN 311 Campylobacter jejuni
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