Conserved Protein Domain Family
cas_Csc1

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TIGR03159: cas_Csc1 
CRISPR type I-D/CYANO-associated protein Csc1
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Statistics
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PSSM-Id: 274458
Aligned: 6 rows
Threshold Bit Score: 268.992
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011323346   8 LTTHGKVGFASREVGRMADTDPYILNTALHYAL--GLAGGNYVDV-------------THQPTY-----IEDTADIVDE- 66  Natronomonas ph...
WP_011448843  14 LEMMSELFFASLEPGNNYTTRPLILNTALYYAL--GYCSGRYVNVpvkk------gsaKQNPTY-----VEDTASFYSK- 79  Methanospirillu...
WP_011320853   9 LQLHDSLYYATREIGRLYETEPIIHNYALCYAL--GLIDSEIYSTtvaeehsyryfcpEQVPKY-----EEHLTPLNQQg 81  Anabaena variab...
WP_011153682   9 LTLHDNVFFASREMGILYETEKYFHNWALSYAFfkGTIIPHPYGLvg---------qnAQTPAYldrdrEQNLLHLNDSg 79  Synechocystis s...
WP_010995732  14 LYCLEPVFFASRELSDTYYTEGVIGNYALTYAL--GRVNSPY-RLqg---------qaTGRPTY-----KEDLQPIAQD- 75  Nostoc sp. PCC ...
WP_011176807   7 ITNISPVQYYTVQSSGGMLTGPFIGDLALDYAS--AYSLGEL-DYhk---------ldMKRPNY------NEIKNFSILw 68  Picrophilus tor...
WP_011323346  67 VYVTPATPVAVEsesirTEy-----------LTTNRNARADTYATPNYPAE--DDPTGkasq-nlpTFERERALAPGNHF 132 Natronomonas ph...
WP_011448843  80 LYVSPAKPVKSI-----RF------------ASEITNARSDEYIQYNTYEKqmNSPTG--------KYGVRKQILPGGKF 134 Methanospirillu...
WP_011320853  82 IYVTPALAISHS-----AIln---------tWKYANNNYHVEMEKTQkn---------------ipSFGRAKEIAPESEF 132 Anabaena variab...
WP_011153682  80 IYVFPAQPIh---------------------WSYQINTFKAA--QSAYYGRsvQFGGKgatknypiNYGRAKELAVGSEF 136 Synechocystis s...
WP_010995732  76 FYILPASPVGRV-----TFrferfnalsdayWYAMTNNRVATAREDLPLQRqgKKPSSfrps-nfpQTGRLRMIERRNKF 149 Nostoc sp. PCC ...
WP_011176807  69 SVAVPENVIKNN-----IFs-----------VNYMKMMYRNTMLGIDYNGTnlNPAYRvgsy-mykNFYFVQPIRPGNKF 131 Picrophilus tor...
WP_011323346 133 RFYVFpygrtAKSAKETLPSYIRLGK-KRGKGRVRY-RIVEAE---RKSGTFSLGHPLSIYDH-DAQPLGGVVMRQMQPT 206 Natronomonas ph...
WP_011448843 135 VFFVLs----FDGNEPDLPVYIRLGK-KRSKASVTW-SECPVT---RKKGSFILNHPVLVDDL-TQIPSRDISFKRMQPF 204 Methanospirillu...
WP_011320853 133 EFFVI------SQKQLKLPKWIRLGK-WMSKAEVTV-TELPKPk--NTEGVFTCTHPLNPLDVmFTNQVISYDVVNMPPV 202 Anabaena variab...
WP_011153682 137 LTYIV------SQKELDLPVWIRLGK-WSSKIRVEV-EAIAPDqikTASGVYVCNHPLNPLDCpANQQILLYNRVVMPPS 208 Synechocystis s...
WP_010995732 150 QTLVF--------GNYQLPNYIRLGK-FMSKVKVNVlNEFPVTl--LPEGEYQSQHYLNAADLpQQIEALAFDLISIPPA 218 Nostoc sp. PCC ...
WP_011176807 132 YAAVK-----TDLGIEKLPAALRVGNgKTGLLKIKY-KSVNME---DLNNIY-----INLFTI-KNIFNKDFNVDNLHIY 196 Picrophilus tor...
WP_011323346 207 PLWFEGKFEADHYAIesptE-----SADRVYYPAGAKF 239 Natronomonas pharaonis
WP_011448843 205 DVIERGSFEGEYIQI----QrggkeKKEDVVFPASIRF 238 Methanospirillum hungatei
WP_011320853 203 SLIQNVQMRGQHYYF----D-----DVKNLKIPARMEY 231 Anabaena variabilis
WP_011153682 209 SLFSQSQLQGDYWQI----D-------RNTFLPQGFHY 235 Synechocystis sp. PCC 6803
WP_010995732 219 PIIKNLHFRGAAWQV----G--------EMIVPAGLHF 244 Nostoc sp. PCC 7120
WP_011176807 197 YVLNHYVMAG---------------PVTGGVMHELYKL 219 Picrophilus torridus
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