Conserved Protein Domain Family
cas_Csc2

?
TIGR03157: cas_Csc2 
CRISPR type I-D/CYANO-associated protein Csc2
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc2 for CRISPR/Cas Subtype Cyano protein 2, as it is often the second gene upstream of the core cas genes, cas3-cas4-cas1-cas2.
Statistics
?
PSSM-Id: 274456
Aligned: 5 rows
Threshold Bit Score: 350.721
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_011448844  25 PKQNYVSILILRELQSAARFTTDG--Te-ANSSIIRIGDE------EVTVGKLFGRKQVASDRRIAKALQR--DLIAekm 93  Methanospirillu...
WP_011320852  20 PMGKYAHFLTIRITESYPLFQTDG--E--LNKARVRAGIKdk---tTISRLSMFKRKQSTPERLVGRELLRkyELVK--- 89  Anabaena variab...
WP_010995731  18 PKGRFITLVILRTTHSETIFRTEGsgEp-MCSEFVQAGLEgenqktIIQRLVMTKRKQVAPERRYGREHLRahELLYtnp 96  Nostoc sp. PCC ...
WP_011323345  24 PGTNYTTLLVLRELDSHAIFTTNG--QdaDITSLSVVGDSgs---iEYSPGLMFMRKQTGSDRRAGKAIQR--ELLEydr 96  Natronomonas ph...
WP_011278681  32 PRGRVVNVYVTLQAENELLIRHEG--G--EDISLATLGSE-------KYPIILYDKIQSAWRRNLLALLRKdyDKHIsei 100 Sulfolobus acid...
WP_011448844  94 nsfykkggWSGCSM-----------EVTkMCQKCPECALFGSAAS---EgDMSVTSRVMYDEAYTIRGINSVVEEYFQNA 159 Methanospirillu...
WP_011320852  90 --------PEDCEY-----------NVN-FAMDNPDCIIYGFAIG---D-SGSEKSKVVVDTAFSITAFDESHETFTLNA 145 Anabaena variab...
WP_010995731  97 ------kdGSLCSL-----------NTNaPCEMCVDCFLY-GFAA---GgGGAQKSRIWTEDAFSILPASDVVGDRTINA 155 Nostoc sp. PCC ...
WP_011323345  97 ----------sdSM-----------DVNdMNPQSVESALYGSAASgddDvDIGVTSRVMYDTAFTVRDASACIDEKFQNA 155 Natronomonas ph...
WP_011278681 101 dalrgksnPWNCMLrptsaakreeeKMGgLCRECPNCMTFGFAVAe--DaKYNLKSRVEGDLFIATTPEQKSVVVRTFNA 178 Sulfolobus acid...
WP_011448844 160 PGDDYAKKa-----------TSGIREPDFFKEGTLFPCVVTLRDVTCEEVLFFLNITDRNTRYGATGTRFGKTRNHILGV 228 Methanospirillu...
WP_011320852 146 PFENGTMAskgengskpgevTSRINQQDHIRPQVFFPSIVTLKDPTEASFLYVFNNIIRTRHYGAQTTRTGRVRNELIGV 225 Anabaena variab...
WP_010995731 156 IYETGTMRdek------gnaSTALNTSEYIKPGVHFLDVVTLKDVTADELRYIIGNILFTSRYGAVSSRVGRMENEILGV 229 Nostoc sp. PCC ...
WP_011323345 156 PGEGYAKGs-----------TANIREPDFFEPGTLFPCTITLRDATPAEVAFVTAITSRNKRYGAATTRLGRVNNRILGL 224 Natronomonas ph...
WP_011278681 179 V-DDATKTtfiet---egtrTGSLFRLSLVKGGTLFVGKVSMKDVTPAEFSVLVLSLATTARIGGNTTDFGKVKIRIPAV 254 Sulfolobus acid...
WP_011448844 229 FASNREGPSSLEISRGVALRLAGGDEVRLPdseslkrvlelD-----SLPLHDVKKNALEVYQHLLKTHRISGIDLGESE 303 Methanospirillu...
WP_011320852 226 VFADGEITSNLRWTQAIYDQMQTNNSLKSP-----------D-----PLDEDEVTNAAKNAIETLMSEEFIVHTDFIGDA 289 Anabaena variab...
WP_010995731 230 FGSITELPSSLELVQATYDAL--GKPLE-------------H-----PLNINQLITASKQVIANW-KNKRGVSVQLSEAE 288 Nostoc sp. PCC ...
WP_011323345 225 YTGSEEGPSNRELTAETIVSFASESNRTLG-----------DvvqapALNADQAAAYVREAYDTACTE--TVAQTPVDDE 291 Natronomonas ph...
WP_011278681 255 ILSPYEMSSGLDL-------FNSAKGLD---------------------SVDQVNAKVRERVKNFSKEGLVYTFDDLGDL 306 Sulfolobus acid...
WP_011448844 304 VTALLDAMKD 313 Methanospirillum hungatei
WP_011320852 290 FEPLLKEVKS 299 Anabaena variabilis
WP_010995731 289 LADLLTDVET 298 Nostoc sp. PCC 7120
WP_011323345 292 Vldellaltd 301 Natronomonas pharaonis
WP_011278681 307 VVKKLTDNGN 316 Sulfolobus acidocaldarius
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap