Conserved Protein Domain Family
release_rtcB

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TIGR03073: release_rtcB 
release factor H-coupled RctB family protein
Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes. [Protein synthesis, Other]
Statistics
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PSSM-Id: 274417
Aligned: 7 rows
Threshold Bit Score: 575.559
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_011060394  12 VSLIASDTTWIEDKALQQLHTTAQLPGMRQVVGMPDLHPGRGYPVGAAFFSTEVAYPALVGNDIGCGMALWQTDLSSTRL 91  Pseudomonas pro...
WP_000528894  12 VFSIASDNLWIEDSAIQQLYTTAKLTGMKRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMALWQTDILGRKY 91  Salmonella ente...
WP_011003998  12 VTLIASDNTWIEGNTIQQLQTTATLPGMRHVAGMPDLHPERGYPVGAAFFSVGRLYPALIGNDIGCGMALWATGLDANKA 91  Ralstonia solan...
WP_011095118  12 VSVIATENTWIEDKAIQQLQITSQLPDMVRVAGMPDLHPGRGYPIGAAFFSQQRFYPALVGNDIGCGMALWRTGLNAKKI 91  Pectobacterium ...
WP_003114117  12 VALIASDSTWIEGKAIQQLQTTAELDGMCRVVGLPDLHPGRGYPVGAAFFSVGRFYPALVGNDIGCGMALWETGLALGKL 91  Pseudomonas aer...
WP_032183295  12 VFTIASDDLWIESSAIQQLHTTANLPDMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPALVGNDIGCGMALWQTDILARKY 91  Escherichia coli
WP_010966653   2 YKILRTEKSWIEGSAVEQVKKLASLKGVENVIGYPDLHPGKT-PIGISIITKDVIYPHLIGNDIGCSISLFETSELKRKF 80  Clostridium ace...
WP_011060394  92 NLDKLEKKIGNIDLPLDEQWDEQRAQLALPVSGHEHSLGTIGGGNHFAELQQLDQVHDADTLQVLALDPKALLLLVHSGS 171 Pseudomonas pro...
WP_000528894  92 NADKLEKRLASLPDVADAQWLEENVPAVMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKAQLLLLVHSGS 171 Salmonella ente...
WP_011003998  92 RLDKLEKRLGNLDGPLDDAWGELATALAPAGTGFDAALGTIGGGNHFAELQQIDTGYDDAAADALGLRARQLLLLVHSGS 171 Ralstonia solan...
WP_011095118  92 SLDKLEKRLGNIDGPLEDDID-----IPPALADFRYSLGTIGGGNHFAELQQLDEIYQPDALNTLHIDPKQLLLLVHSGS 166 Pectobacterium ...
WP_003114117  92 SADKLEKRLGNLDLPLDETWSDCIEALDLPAREHWRALGTIGGGNHFAELQQVETVFDQAALHALGLDADRLQLLVHSGS 171 Pseudomonas aer...
WP_032183295  92 NADKFEKRLSALDDVAEESWLEENLPSVFAQHPWRSSLGSIGGGNHFAELQQVDQIIDAELFALSGLDAQHLQLLVHSGS 171 Escherichia coli
WP_010966653  81 KVEKVMKTLQNSDLKNEIKKD--------------FNLGTIGGGNHFAEFTLVDKILDES--ETTNFDKNKVYLLVHSGS 144 Clostridium ace...
WP_011060394 172 RGLGEAILRSHVDQHG-HNGLLMTSTAGAQYLEQHDQALRFAEANRRLIAERLLHNLRAKGQPLLDINHNLVSAAQVDGV 250 Pseudomonas pro...
WP_000528894 172 RGLGQAILRRHVEAFS-HNGLPEDSDDARHYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHNFVEPCTVAGE 250 Salmonella ente...
WP_011003998 172 RGLGQAILDEQLGTHG-HDGLPQGSPECAAYLARHDTALRFAKANRELIARRMLDRLHTQGRPLLDVHHNLVMPATIEGE 250 Ralstonia solan...
WP_011095118 167 RGLGQTILEAHVREFG-HQGIEANTPAAEAYLEQHQFALTFATHNRRLIAQRMLERWHTEGDAALDVNHNLVTSATIESI 245 Pectobacterium ...
WP_003114117 172 RGLGQAILQEHVSLHG-HAGLLDGSLEASAYLARHADALRFAEGNRQLIARRILERLRCDGLELLDINHNLVVPAQVDGV 250 Pseudomonas aer...
WP_032183295 172 RGLGQSILQRHIASFS-HHGLPEGSDDALSYIAEHDDALAFARINRQLIALRIMQQVKANGNSVLDVAHNFVSACRIGDQ 250 Escherichia coli
WP_010966653 145 RGLGEEILRKYIDYYScQNGLAVNSEGFNNYISDYKKAVVFAKENRQLIAKNLCQLLNLKA---FDLKIEAIHNGLELRE 221 Clostridium ace...
WP_011060394 251 SGWLHRKGATPSDQGPVVIPGSRGDYSYLVQPLPQS-FSLYSLAHGAGRKWLRSDCKGRLATRFSFDQLKRTQLGSRVIC 329 Pseudomonas pro...
WP_000528894 251 AGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSE-ESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCRTGMGSRVIC 329 Salmonella ente...
WP_011003998 251 PGWLHRKGATPSDAGPVVIPGSRGDFSYVVVPQPSE-HSLFSLAHGAGRKWMRSECKDRLARRFSPAQLNRTRLGSHVIC 329 Ralstonia solan...
WP_011095118 246 SGWLHRKGATPADCGPVIIPGSRGDYSYIVQPIPHA-DSLYSLAHGAGRKWMRTECKDRLSSRYSVQQLARTRFGSRVIC 324 Pectobacterium ...
WP_003114117 251 DGWLHRKGATPADQGVLVIPGSRGDYSYLVEPVPSA-QSLFSLAHGAGRKWQRGECRERLAARFSVDQLGRTRLGSRVIC 329 Pseudomonas aer...
WP_032183295 251 QGWLHRKGATPDDNGLVIIPGSRGDYSWLVQPVRSE-ETLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVIC 329 Escherichia coli
WP_010966653 222 DYIIHRKGAATALNKYVVIAGSRGDYSYIVKPINSSlETGFSIAHGAGRKWKRSGCKEKLQGKFSKKAIRNRSFSYNLIC 301 Clostridium ace...
WP_011060394 330 EDRGLMYEEAPEAYKSIDSVVGSLRDAGLVKIIARLKP 367 Pseudomonas protegens
WP_000528894 330 RDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRP 367 Salmonella enterica
WP_011003998 330 EDKQLIYEEAPEAYKPVDSVIAPLEQAGLVKVLARLRP 367 Ralstonia solanacearum
WP_011095118 325 QDRQLIFQEAPEAYKPIDSVIGAMQQAGLITLIARLKP 362 Pectobacterium atrosepticum
WP_003114117 330 GDRQLIYEEAPEAYKGIDSVVGALLEAGLLRLVARLKP 367 Pseudomonas aeruginosa
WP_032183295 330 RDKQLIFEEAPQAYKSAESVVQCLVQAGLIIPVARLRP 367 Escherichia coli
WP_010966653 302 SNTNLVYEEAPEAYKNIDRVIDDLLSFNLIKVVARLKP 339 Clostridium acetobutylicum
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