Conserved Protein Domain Family
couple_hipA

?
TIGR03071: couple_hipA 
HipA N-terminal domain
Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.
Statistics
?
PSSM-Id: 274416
Aligned: 11 rows
Threshold Bit Score: 126.258
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_028860695   5 ELHLWMNG--EHVGIWTASRAGvPILRYDDAWLRSPNMRPLSLSLPIPAgvPEL--RGQVVDDYFDNLLPEAQpIRERVR 80  Ralstonia solan...
WP_005874041   3 QAIVYWKT--LKAGILTESDEG-YSFAYDKDYLTMPEAQGISLTMPLRE--EPF--QSNMLHPFFDGLIPEGW-LLDIAQ 74  Porphyromonas g...
KFJ63846       4 QLNVHLKD--IHIGYLKK-QGSkLSFNYSKEYLDSENAQPISISIPLSE--NEY--KHDVVHPFFSGLLPDEP-ARSRLA 75  Francisella tul...
WP_005784907   3 QGVVYLNK--ERVGIITELSSNeYKFRYDDEYFNDPSKPSISLTLTKQQ--QEY--TSHYLFPFFANMLSEGH-NRIVQA 75  Bacteroides
WP_011050155   2 RLVALIEN--QTIGHLASDPHGhPRFTYAPDWQHSKSAIPLSLNLPLSR--EHH--PTEAVSAVLWGLLPDNEaTLQRWA 75  Xanthomonas
WP_011216258   3 KAYISVNG--IRAGILEELEGKkYQFTYLNDYQGAP----VSLTMPLTN--KIY--DFDVFPPFFEGLLPEGI-MLEALL 71  Legionella pneu...
WP_011111888   4 ELEVWLFA--ERIGTLALIEDR-LNFRYSPDWLSRPDAATLSSSLHLQA--ESF--DDHHTRPFFGGLLPEGQ-LRRLIA 75  Nitrosomonas eu...
WP_012753633  11 DLAVLLSG--ARIGTVRQLASGkLQFEYARSWREVQPNLPLSLSMPLVA--DVH--ADGPVTAFMWGLLPDNEkILDGIA 84  Methylobacteriu...
WP_010920579   6 GLIVRMDGfnLPAGYLASDEARaISFAYDDRYIAAG-GPPLSLSMPLEQ--VSF--GDVTARAFFDNLLPEND-QMQRVM 79  Caulobacter vib...
AIK87704       4 TADIWFKD--TLAAHFTRD-GDqTTFSYTADYAG----PPIATSLPINS--EPVitRSGAIPPFFAGLLPEGR-RLSSLR 73  Corynebacterium...
WP_011212707   5 KLYILMNN--ELVGVLTQDNAGgLSFSYVADWISKPHSRPVSLSLPLIN--QRF--SGEVVYNFFDNLLPDNPqIRARIQ 78  Legionella pneu...
WP_028860695  81 RRFGLASTDAAELLAAIGR-DCVGAVQLL 108 Ralstonia solanacearum
WP_005874041  75 KNWKIDSRDRMALLLACCR-DCIGAVSIE 102 Porphyromonas gingivalis
KFJ63846      76 KYLHISNKNTFELLKAIGG-ECAGAISVY 103 Francisella tularensis
WP_005784907  76 RLLQIDEKDDFGILLATAHtDTAGAVTIK 104 Bacteroides
WP_011050155  76 SRFQVSPRNPLALLSHVGE-DCAGAVQFV 103 Xanthomonas
WP_011216258  72 RKYKIDKNDYFGQLIIVGQ-DVVGAVTIE 99  Legionella pneumophila
WP_011111888  76 QQFQVSSQNDFALLDHIGG-ECAGAVTLL 103 Nitrosomonas europaea
WP_012753633  85 KRHQCSARNPFSLLRATGE-DCAGAVQFV 112 Methylobacterium extorquens
WP_010920579  80 DREGLARDDIVGLLSHLGA-DCSGAISCL 107 Caulobacter vibrioides
AIK87704      74 RNIKASADDELSLLLAVGA-DPVGAVAIF 101 Corynebacterium glutamicum
WP_011212707  79 ARFQAKSSRPFDLLALIGG-DCVGAIQIV 106 Legionella pneumophila
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap