Conserved Protein Domain Family
phage_rel_nuc

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TIGR03033: phage_rel_nuc 
putative phage-type endonuclease
Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions.
Statistics
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PSSM-Id: 200235
Aligned: 8 rows
Threshold Bit Score: 194.949
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAX89426        5 DLVQRSEKWFAWRKTG------ITASMIPVIMGLSPYQTp----PWRLWAEKTG------FVLPEDLsnNTFTFNVVSSK 68  Vibrio cholera...
jgi:Psyc_0982  18 TSTLCREDWLTLRQSG------IGGSDIAAIIGVSPYAT-----AYDIYQSKTQ------PLADEDM--NEFAYWGTILE 78  Psychrobacter ...
AAN68107       22 TKELPREDWLQIRKQG------IGSSDAAAAVGLNPYKS-----QLELWLEKTSrdagmpKADPQDE--ESPMYWGNVLE 88  Pseudomonas pu...
CAB38249        4 DLKQNSWEWFQHRKNF------INASEIGTIMGLNPYET-----QEDLIKKKI-------FGSTFIT--NEAVEHGKNTE 63  Phytoplasma sp.
BAD04707        2 QLEQNTLAWHNHRKKY------INASEVAAIMGLNPFET-----KEQLLKRKV-------FGTPIED--NEAMKRGRILE 61  Onion yellows ...
CAI10322        5 KLDQRSQEWHDWRAGKdidgprITASNIAVIAGISPFKS-----RYQLWEEMTG------RREPDKM--NPAMAHGVETE 71  Aromatoleum ar...
NP_048514      27 QWVQRTHEWYEVRKGL------MTASDAAGALGIPPFKSfkgcpREELLQKKLN------NAPVQGM----ALEHGVKYE 90  Paramecium bur...
BAC41641       10 DIAQRTPEWHAWRREG------MSATSCAVVMGENPDKT-----PLELWKELVG------IVEPADLsvIPQVRRGVKFE 72  Pseudomonas re...
AAX89426       69 SR-ARSA-VEDQYGIVYMPVCVEAD--HNPLFKASLDGLQAis--------------kGIREVLEIKCPCEK----IYNE 126 Vibrio cholera...
jgi:Psyc_0982  79 DTvAREFsKRSGLKIQNVNFLMRHP--EHRWAIANIDRAVVnnevkgwgnvrfkdgklTTDQIVEIKTASEYv---GKNW 153 Psychrobacter ...
AAN68107       89 PIvAWHYsKRTKNKVRRINAVLQHPdpELPWMLANIDREVIg---------------aDDVQILECKTAGINg---ARLW 150 Pseudomonas pu...
CAB38249       64 PK-ANLF-FCIKNKKNYEPAVFTKG-----IFSASLDGFNK-----------------ETKTMLEIKCPLNKd---STAW 116 Phytoplasma sp.
BAD04707       62 PQ-ARNF-FNQTQKMQFEPKVFVKD-----FMSASLDGWDA-----------------QSQSLLEIKCPISFa---SYTW 114 Onion yellows ...
CAI10322       72 DE-ALAA-WIQDHGDYAQPCCIEHD--GIPWVAASLDGLTL-----------------TGTKAVEIKCPYSRygdaPKLW 130 Aromatoleum ar...
NP_048514      91 TE-AAEYaMKIIGGRMFEFGLLIHD--EYPWLAASPDGIT------------------ADGHAIEIKCPLRR-------- 141 Paramecium bur...
BAC41641       73 PL-ALQA-FEDKYGKMALPFCAEST--AYPFIRASFDGVL------------------DDKSPVEIKNLSET----NHLE 126 Pseudomonas re...
AAX89426      127 LVELQ-SKAPTFkmYAAQVQWQLNCAGSP--QGRLFFYLRG 164 Vibrio cholerae non-O1/non-O139
jgi:Psyc_0982 154 GNEES-DEVPDQ--YQCQAQWYMGVTDTQ--VCHMAVLIGG 189 Psychrobacter arcticus 273-4
AAN68107      151 K-----EGVPEY--VQLQVMHQLAVTGKQ--AADVAVLLGG 182 Pseudomonas putida KT2440
CAB38249      117 KSFYKdGIIPPY--YLAQIQCGLYCAEID--KAYFLVYIND 153 Phytoplasma sp.
BAD04707      115 QSFLNeGKMPTI--YYAQLQAQIYCSQSI--KAYFLVYQND 151 Onion yellows phytoplasma OY-M
CAI10322      131 VSAQA-GEIPAY--YLAQMQWQMFASNGEilSMDFWVYWAG 168 Aromatoleum aromaticum EbN1
NP_048514     142 -KIIP-GEVPHH--YEAQIQVQLEVCNLD--ACWFIQYKPG 176 Paramecium bursaria Chlorella virus 1
BAC41641      127 VLQLR-EHSKAFklYRWQVMHQMIVSGAR--RGYLWFWSPk 164 Pseudomonas resinovorans
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