Conserved Protein Domain Family
cas_csx12

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TIGR03031: cas_csx12 
CRISPR system subtype II-B RNA-guided endonuclease Cas9/Csx12
Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to pfam01844, HNH endonuclease.
Statistics
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PSSM-Id: 274401
Aligned: 3 rows
Threshold Bit Score: 1051.51
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_003023307    7 PIAIDLDVKNTGVFSAFyqkgtslEKLDNKNGKVYELSkDSYTLLMNNRTARRHKRRGIDRKQLVKRLFKLVWTEQLNLE 86   Francisella t...
WP_011139431    5 PISVDLGGKNTGFFSFT-------DSLDNSQSGTVIYD-ESFVLSQVGRRSKRHSKRNNLRNKLVKRLFLLILQEHHGLS 76   Wolinella suc...
WP_011212792    9 PIGIDLGGKFTGVCLSHleafaelPNHANTKYSVILIDhNNFQLSQAQRRATRHRVRNKKRNQFVKRVALQLFQHILSRD 88   Legionella pn...
WP_003023307   87 WDKDTQQaISFLFNRRGFSFItdgysteylnivpeqvkailmdifddyngEDDLDSYLKLATEQEskiseiynkLMQKIL 166  Francisella t...
WP_011139431   77 IDVLPDE-IRGLFNKRGYTYA-----------------------------GFELDEKKKDALESD---------TLKEFL 117  Wolinella suc...
WP_011212792   89 LNAKEETaLCHYLNNRGYTYV-----------------------------DTDLDEYIKDETTIN---------LLKELL 130  Legionella pn...
WP_003023307  167 EFKLRklctDIKDDKVSTKTLKEITSYefellADYLANYSESLKTQKFSYTDKQGNLKELSYYHHDKY--NIQEFLKRhA 244  Francisella t...
WP_011139431  118 SEKLQ----SIDRDSDVEDFLNQIASN-----AESFKDYKKGFEAVFASATHSPNKKLELKDELKSEYgeNAKELLAG-L 187  Wolinella suc...
WP_011212792  131 P--------SESEHNFIDWFLQKMQSS--------------EFRKILVSKVEEKKDDKELKNAVK-----NIKNFITG-- 181  Legionella pn...
WP_003023307  245 TINDEILGTlltddfdiwnfnfekfdFDKNEEKlqnqedkdhtqahlhhfvfvvnkiksemasGGRHRSQYFQEITNVLD 324  Francisella t...
WP_011139431  188 RVTKEILDE-----------------FDKQENQ------------------------------GNLPRAKYFEELGEYIA 220  Wolinella suc...
WP_011212792  182 --------------------------FEKNSVE------------------------------GHRHRKVYFENIKSDIT 205  Legionella pn...
WP_003023307  325 ENNHQEGYLKNfcenlhnkkySNLSVKNLVNLVGNLSNLELKPLRKYFNDKIHAKADHWDEQKFTETYCHWILgEWrvgv 404  Francisella t...
WP_011139431  221 TNEKVKSFFDS----------NSLKLTDMTKLIGNISNYQLKELRRYFNDKEMEKGDIWIPNKLHKITERFVR-SW---- 285  Wolinella suc...
WP_011212792  206 KDNQLDSIKKK------------IPSVCLSNLLGHLSNLQWKNLHRYLA----KNPKQFDEQTFGNEFLRMLK-NFr--- 265  Legionella pn...
WP_003023307  405 kdQDKKDGAKYSYKDLCNELKQkvtKaGLIDFLLELDPCRTIPPYLDNNNRKPPKCQSLILNPKFLDNQYPNWQQYLqel 484  Francisella t...
WP_011139431  286 --HPKNDADRQRRAELMKDLKS---K-EIMELLTTTEPVMTIPPYDDMNNRGAVKCQTLRLNEEYLDKHLPNWRDIA--- 356  Wolinella suc...
WP_011212792  266 --HLKGSQESLAVRNLIQQLEQ---SqDYISILEKTPPEITIPPYEARTNTGMEKDQSLLLNPEKLNNLYPNWRNLIpgi 340  Legionella pn...
WP_003023307  485 kklqsiqdyldsfetdlKDLKSSKdqpyfveYKSsnQQMASGQRDYKDlDARILQFIFDRVKASDELLLNeiyfqakklk 564  Francisella t...
WP_011139431  357 -----------------KRLNHGK-------FND--DLADSTVKGYSE-DSTLLHRLLDTSKEIDIYELR---------- 399  Wolinella suc...
WP_011212792  341 ida---------hpfleKDLEHTK-------LRDrkRIISPSKQDEKR-DSYILQRYLDLNKKIDKFKIKkqls------ 397  Legionella pn...
WP_003023307  565 qkasseleklesSKKLDEVIANSqlsqiLKSQHTNGIFEQGTflhlvcKYYKQRQRARDSRLYImpeyrydkKLDKYNNT 644  Francisella t...
WP_011139431  400 ------------GKKPNELLVKT-----LGQSDANRLYGFAQ------NYYELIRQKVRAGIWV--------PVKNKDDS 448  Wolinella suc...
WP_011212792  398 --------flgqGKQLPANLIET-----QKEMETHFNSSLVSvliqiaSAYNKEREDAAQGIW----------------- 447  Legionella pn...
WP_003023307  645 GRFDDNNQLLTYCNHKPRQKRYQLLNDLAGVLQVSRNQ--LLSSVEEw-----FQQAqRVGEIsksqdeqifewlksfKI 717  Francisella t...
WP_011139431  449 LNLEDNSNMLKRCNHNPPHKKNQIHNLVAGILGVKLDEakFAEFEKE------LWSA-KVGNK---------------KL 506  Wolinella suc...
WP_011212792  448 --FDNAFSLCELSNINPPRKQKILPLLVGAIL---SED--FINNKDKwakfkiFWNThKIGRT---------------SL 505  Legionella pn...
WP_003023307  718 ASYCKAAVEMQKQYRGTLKNAIQTAIfrqseninknkntgnqqqalsenSKDVKSLTADEKKLLKLIENI--AKASQKIG 795  Francisella t...
WP_011139431  507 SAYCKNIEELRKTHGNTFKIDIEELR-----------------------KKDPAELSKEEKAKLRLTDDVilNEWSQKIA 563  Wolinella suc...
WP_011212792  506 KSKCKEIEEARKNSGNAFKIDYEEAL------------------------NHPEH--SNNKALIKIIQTI--PDIIQAIQ 557  Legionella pn...
WP_003023307  796 ESLGLNDKQIKKFNSIYSFAQIQQIAFAKRKGNANTCAVCSADNAHRMQQIKITElvEDNKDNIILSAKAQRLPAIPTRI 875  Francisella t...
WP_011139431  564 NFFDIDDKHRQRFNNLFSMAQLHTVIDTPRSGFSSTCKRCTAENRFRSETAFYND--ETGEFHKKATATCQRLPADTQRP 641  Wolinella suc...
WP_011212792  558 SHLGHNDSQALIYHNPFSLSQLYTILETKRDGFHKNCVAVTCENYWRSQKTEIDP--E--------ISYASRLPADSVRP 627  Legionella pn...
WP_003023307  876 VDGAVKKMATILAKNIVDDNWQNIKQVlSAKhQLHIPIITESNAFEFEPALADVKGKSLK-------DRRKKALERI--S 946  Francisella t...
WP_011139431  642 FSGKIERYIDKLGYELAKIKAKELEGM-EAK-EIKVPIILEQNAFEYEESLRKSKTGSNDrvinskkDRDGKKLAKAkeN 719  Wolinella suc...
WP_011212792  628 FDGVLARMMQRLAYEIAMAKWEQIKHIpDNS-SLLIPIYLEQNRFEFEESFKKIKGSSSD-----------KTLEQAieK 695  Legionella pn...
WP_003023307  947 PENIFKDKNNRIKEFAKGISAYSGANLtdgdfdGAKEELDHIIPRSH--KKYGTL-NDEANLICV 1008 Francisella tularensis
WP_011139431  720 AEDRLKDKDKRIKAFSSGICPYCGDTI------GDDGEIDHILPRSHtlKIYGTVfNPEGNLIYV 778  Wolinella succinogenes
WP_011212792  696 QNIQWEEKFQRIINASMNICPYKGASI------GGQGEIDHIYPRSLskKHFGVIfNSEVNLIYC 754  Legionella pneumophila
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