1NEK


Conserved Protein Domain Family
succ_dehyd_anc

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TIGR02968: succ_dehyd_anc 
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succinate dehydrogenase, hydrophobic membrane anchor protein
In E. coli and many other bacteria, two small, hydrophobic, mutually homologous subunits of succinate dehydrogenase, a TCA cycle enzyme, are SdhC and SdhD. This family is the SdhD, the hydrophobic membrane anchor protein. SdhC is apocytochrome b558, which also plays a role in anchoring the complex. [Energy metabolism, TCA cycle]
Statistics
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PSSM-Id: 274369
Aligned: 47 rows
Threshold Bit Score: 56.4208
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1NEK_D         9 GRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEvwi-gfFASAFTKVFTLLALFSILIHAWIGMWQVLTDYV--K 85  Shigella flexneri
jgi:Nwi_2799  25 AHSGTTDFWRQRLTSVAMILLIVPMVVVMMILLGRNQAgaa-qiLGSPPIAIIMLLFVVASIWHMKIGMQVIIEDYV--H 101 Nitrobacter win...
AAO24620      27 SGHGAGHFWLQRLTGASNALLMLAFVVIIALMAGRTYPqav-alVSHPLVAIILILAVVSVTIHMRLGMQTVIEDYV--H 103 Methylobacteriu...
AAT91479      17 AKTGTEHFVIQRLTAAALVPLSIWFLVFVLSLIGADHAaas-aaVAKPWNAILLVAFLIASFWHAQLGMQVVLEDYV--H 93  Xanthomonas citri
AAF83881      17 AKAGTGHFVLQRLTAIALVLLGVWFLAFLLTLLGVDYAaav-aaVAKPWNAILLIGFLVAAFWHAQLGLQVVLEDYI--H 93  Xylella fastidi...
BAE52755      16 AKEGAGHWIAQRVTAIFLIPLSLWFAVSVIGLSHADYAtfk-awMAKPGNSSLLLLTVLTVLYHAQLGLQVVIEDYV--S 92  Magnetospirillu...
Q92J98        18 AKSGSHHWLLQRVTGIILALCSVWLIYFTLTNKNNDINiimlweLKKPFNVVALLITVVISLYHAMLGMRVVIEDYI--S 95  Rickettsia cono...
CAI08715       3 LFLGQRAWMLQRVTAVVLLIFLAAAAAMLLAGLPLTYErwy-elATSPHGAVLIVVLFAALALHGWIGIRDIVLDYI--H 79  Aromatoleum aro...
jgi:Tcr_2030  12 FLSGLRAHTWQRISAYYLLVYLPFSVLYLSDRSFDRYElfq-ahLLQPEFWVPTFIALGLLIVHSWVGLRDVLLDYLprR 90  Thiomicrospira ...
jgi:Noc_2472   1 -MTGLRAWLVQRGTAVIMLVLLLFFLARLMQGSFKTYEawr-ewISDPLVSIMVALFFGVLLLHSWVGLRDIILDYV--R 76  Nitrosococcus o...
1NEK_D        86 PLALRLMLQLVIVVALVVYVIYGFVVVW 113 Shigella flexneri
jgi:Nwi_2799 102 DGKLKLASIMANNFFSVTLALTAAYAIF 129 Nitrobacter winogradskyi Nb-255
AAO24620     104 SHGLKFAALIANTFYAVAVAAACLYAIL 131 Methylobacterium extorquens
AAT91479      94 DSLLALIAQTLVRFVAVLGAIVSVFAVA 121 Xanthomonas citri
AAF83881      94 NSFLALALQTMVKFIAVLGAVASVFAVV 121 Xylella fastidiosa 9a5c
BAE52755      93 CECKKIAALVGSKLIIAFLAVFMTVSIL 120 Magnetospirillum magneticum AMB-1
Q92J98        96 YHKLRNTLIIIVQLFCIVTIVAFVVALF 123 Rickettsia conorii str. Malish 7
CAI08715      80 PPAVRLPLLGLIALVLIAIVIRVALTMA 107 Aromatoleum aromaticum EbN1
jgi:Tcr_2030  91 FNVMGLVLLGGGLFWVSAELIYLALQLA 118 Thiomicrospira crunogena XCL-2
jgi:Noc_2472  77 PVSLRLFAHSLIVVVYSGIGFWVIRILL 104 Nitrosococcus oceani ATCC 19707
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