Conserved Protein Domain Family
Sig70_famx1

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TIGR02943: Sig70_famx1 
RNA polymerase sigma-70 factor, TIGR02943 family
This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Statistics
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PSSM-Id: 274359
Aligned: 6 rows
Threshold Bit Score: 305.536
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
jgi:Bcep18194_B0008   4 AYDDPVYLAQLRRDLLRFARLQLRD-ADAAEDAVQEALTAAWSHAGDFAGLSAHKTWVFGILRNKLIDVLRARQRTVSLS 82  Burkhold...
AAQ60641              1 MTVDPQAIEQERPYLLRYALAQLRE-RDAAEEAVQETLLAALEARDGFSGKSTLRTWLTSILRFKLIDALRRKGKEKLFE 79  Chromoba...
jgi:ReutA_0179        1 MPHDTADLETLRPHLLRFARLQLRD-EALAEDAVSDTLLAVLEHPERFAGQSALKTYLVGILKHKIIDLLRSGRREVRLA 79  Ralstoni...
jgi:Daro_3150        16 PLHDPEFLTDLRRDMLRFAEMQLRN-RAQAEDAVQEALTGALLGRESFASRASLRTWVLSILKNKIIDVLRAKVRENVVA 94  Dechloro...
tigr:NMB2144          4 PDLTDAELIESRKLLLHFARLQLPDhPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALRQIGRQRKVF 83  Neisseri...
WP_005555222         10 QHISSQEIEDIRRQMLKFATLQLRD-EDLAEDVVQETLVKAYQHATSFKGASALKTWFFAILKNQIIDLINYRKRTVNVS 88  Aggregat...
jgi:Bcep18194_B0008  83 ---ALDAELDGESvlDRELFKENGHWa-aHAKPRPWPRPETLLQQQQFWTLFEACLDHLPEQIGRVFMMREFLDFEMTDI 158 Burkhold...
AAQ60641             80 ---SLDEECDDGD--FDGLFTQDGHW---REPVRAWSGPESQLVSKQFWQVFEECSKVMPRRTAMVFAMREVMGMEIADI 151 Chromoba...
jgi:ReutA_0179       80 latDEDGETQSEQdaFDALFTRNGHY---QDMPSDWGSPDRTLERREFFEILQACVDRLPAKTARVFMMREWLELETEEI 156 Ralstoni...
jgi:Daro_3150        95 ---DVEND-DD----LNAYFNDRQHWa-eDTRPSEWQTPQQAMENKRFWEVFEACLYRLPDASARIFTMREVLGFDTDEI 165 Dechloro...
tigr:NMB2144         84 t--TLDDELLDEA--FESHFSQNGHWt-qEGQPQHWNTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEI 158 Neisseri...
WP_005555222         89 ---EIYDD-EDEAdePNAFFDQSGHWdrsHFSPQTWHEPDNQVHKREFWVVFEACLEHLPAQQARVFMMREYFEMKSEQI 164 Aggregat...
jgi:Bcep18194_B0008 159 CSELTLTTNHCSVLLYRARTRLRTCLSEQGLTTED 193 Burkholderia lata
AAQ60641            152 CNNLEITATNCSVLLYRARMSLRECFSTRWSREDE 186 Chromobacterium violaceum ATCC 12472
jgi:ReutA_0179      157 CQDLEVSATNVWVILYRARMRLRECLELNWFGHQP 191 Ralstonia eutropha JMP134
jgi:Daro_3150       166 CQTLAITSNNCWVQLHRARLALRACLGANWFGEAA 200 Dechloromonas aromatica RCB
tigr:NMB2144        159 QQMCGISTSNYHTIMHRARESLRQCLQIKWFNQEN 193 Neisseria meningitidis MC58
WP_005555222        165 CEECDLSVSNLHVLLYRARLQLQACLSNNWFDEKK 199 Aggregatibacter actinomycetemcomitans
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