Conserved Protein Domain Family
PEP_resp_reg

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TIGR02915: PEP_resp_reg 
PEP-CTERM-box response regulator transcription factor
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see SP|Q06065). These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). [Regulatory functions, DNA interactions]
Statistics
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PSSM-Id: 274348
Aligned: 6 rows
Threshold Bit Score: 761.596
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAR35316        4 LLIVDDNEDIRKQLKWGIgKEYTLFLAADAREAIDVFRKQRPTVVTLDLGLPPHEDSSEEGFRCLEEMLRIAPDVKVIVI 83  Geobacter sulf...
tigr:CPS_5030   4 LLIVDDDLGIQKQLKWSL-ADYEVVLAGTRESAIAAVRRYEPKVVTLDLGLPPDAANASEGLAALKQILEISPHTKVIVI 82  Colwellia psyc...
jgi:Tbd_0197    8 ILLVEDDLGLQKQLKWSL-ADYELIVAADRDSAIAQLRRHEPPVVLLDLGLPPDVDGATEGLEALQQILSLSPVTKVIVV 86  Thiobacillus d...
jgi:Daro_2438   9 LLIVEDDPALQKQLRWSF-DQYEPLAAGDRESALALVHRHRPAVVTMDLGLPPDADSVSEGFLLLEQILSAQPDTKVIVL 87  Dechloromonas ...
CAD85035       10 LLVIEDDPGLQKQLRWSF-DDCNVAVASDRESALAQVRRHEPAVVTMDLGLPPDPDGATEGLATLQQILAVAPDTKVIVL 88  Nitrosomonas e...
jgi:Noc_1997    7 LLIVEDDLGLQGQLRWAF-CGYEIAVAKDRQEAVALVRRHEPPVVTLDLGLPPNPGGVSEGMASLQEILALAPYTKIIVI 85  Nitrosococcus ...
AAR35316       84 TGNDGRENAVKAVQLGAYDFYQKPINLDELKVIVKRAFHLQTLEEENRRLQSALDggstEFRGFVGQCPEMQQVFSTIRK 163 Geobacter sulf...
tigr:CPS_5030  83 TGNDDRTNALKAIEMGAYDFYQKPVDADVINVIVSRAFSLATIETDNRSMKSIVG----CDTGIIGSSESIDRLRLMVQR 158 Colwellia psyc...
jgi:Tbd_0197   87 TGNLDRSNAVKAIRLGAYDFFQKPFDPDVLALMIARALHVHGLETENRRLTRQRGs---SLQGLITSSEPMLKICRTIEK 163 Thiobacillus d...
jgi:Daro_2438  88 TGQNDRTNALRAIGLGAYDFFAKPFEPELLTLTIDRAFRLYELQQENRRLQAAQHp--tALGGLLTRDAGMQRICRTIEK 165 Dechloromonas ...
CAD85035       89 TGNQNHENALKAINMGAYDFHQKPLDANVLSLIVNRAFYLHRLQRENRELLKSSSs--tAIPGLITNDPGMVKICQQIER 166 Nitrosomonas e...
jgi:Noc_1997   86 TGNDSQEHAVQAVGAGAYDFYSKPIDPDILKLTIDRAYRLYELEMENRRLRRAGHs---SLEGVIAVSPGMKKICRTIEK 162 Nitrosococcus ...
AAR35316      164 VAASDISVLIHGESGTGKELVARAIHAMSLRKDGPFIPINCGAIPENLLEAELFGHEKGAFTGALNRVLGKVEYAHKGTL 243 Geobacter sulf...
tigr:CPS_5030 159 IAPTEITALLLGESGTGKEVTAKAIHKVSDRSDKPFVAINCASIPENLLESELFGFEKGAFTGAHKTTLGKIECAQGGTL 238 Colwellia psyc...
jgi:Tbd_0197  164 VAPANATVLLLGESGTGKEVLARGVHELSPRSNKRFVAINCAAIPDTLLESELFGYEKGAFTGAAKQTIGRIEYANEGTL 243 Thiobacillus d...
jgi:Daro_2438 166 VANSNATVLLLGESGTGKEVLARGLHEASPRKNERFVAINCAAIPENLLESELFGYEKGAFTGAAKTTLGKIETAHGGTL 245 Dechloromonas ...
CAD85035      167 IASSDVTVTLLGESGTGKEVLAKALHQLSDRNSKRMVAVNCAAIPESLLEAELFGYEKGAFSGAVKQTPGKIELAQGGTF 246 Nitrosomonas e...
jgi:Noc_1997  163 IAPADVTAFILGESGTGKEVIARALHQLSYRREQTFVAINCAAIPENLLESELFGHEKGAFTGAVRQTRGKIEYAHEGTL 242 Nitrosococcus ...
AAR35316      244 FLDEIGELPLNLQVKLLRFLQEKVIQRVGGREDIAVDARIVAATNVDIARSMAEGTFREDLFYRIGVVSITLPPLRSRGE 323 Geobacter sulf...
tigr:CPS_5030 239 FLDEIGDMPYQLQAKLLRFLQEKIIERLGGRKEIPVDVRVICATNQNLEVMVSEKTFREDLFYRITEITLNIPPLRDRDE 318 Colwellia psyc...
jgi:Tbd_0197  244 FLDEIGDLPMPLQAKLLRFLQERVIERLGGRGEIPVDVRVVCATHRDLAAMIREGGFREDLYYRLSEISVNIPPLRERPG 323 Thiobacillus d...
jgi:Daro_2438 246 MLDEIGDLPLALQAKLLRFLQERVIERLGGRHEIPVDVRIVCATHQDLKSHIKEGRFREDLFYRLAEIVIDIPPLRSRDG 325 Dechloromonas ...
CAD85035      247 FLDEIGDLPLSLQAKLLRFLQERVIERIGGRELIPVDVRIVCATHQNLKKMIEAGTFREDLYYRLCEISIHIPALRDRIG 326 Nitrosomonas e...
jgi:Noc_1997  243 FLDEIGDLPRGLQAKLLRFLQERVIERVGGREEIPVDVRVICATNQDLKELIAQNQFREDLYYRIAEVTVTLPPLRERPG 322 Nitrosococcus ...
AAR35316      324 DVMLLANLFLKRFSIELRKKTKGFSSTSREYLEAYAWPGNVRELENKVQRAVLMAASPIIEPDDLGFTERpiPRASTSLE 403 Geobacter sulf...
tigr:CPS_5030 319 DVLILANFFLQQYATEYKSSAKSFADDALYGLRHHKWPGNIRELQNKVKSSVIMSTSNQVTAFDLGFFDK--ENAEYELS 396 Colwellia psyc...
jgi:Tbd_0197  324 DAVLLAQAFLERYARELGRRIRGFTADALAALEAHPWPGNVREMENLIKRATIMADGSQITAADLGLDAG--EVEPRP-- 399 Thiobacillus d...
jgi:Daro_2438 326 DAALLAHAFVHRFANDHKRGGMTLTEDAVRAIEAHNWPGNVRELENAVKRAVIMADGHQITREDIGLDHL--EGTANF-- 401 Dechloromonas ...
CAD85035      327 DAVLLAHHFKNQFRVKEKRQSLNFSQDALDAIGSYSWPGNIREIENCIKRAVIMAEGSQITAADLGLQPA--ADSFAP-- 402 Nitrosomonas e...
jgi:Noc_1997  323 DAVVIGRALLEHFSRTQGKAVRGFTDDAIRAIETHTWPGNVRELENCIKRAVIMVEGNRIASEDLDLPAS--ASPEQQSL 400 Nitrosococcus ...
AAR35316      404 gVSLREARDRVEREMVREAISRCKGNIARAAEELGISRPTIYDLMKKHGIS 454 Geobacter sulfurreducens PCA
tigr:CPS_5030 397 -LNLRVVREQAETIAIQKAYALTDGNMSKTSELLGITRPTLYSLIEKYQIA 446 Colwellia psychrerythraea 34H
jgi:Tbd_0197  400 -FNLRQARENAERIAVSRALAHSDGSIAQAAELLGITRPTLYDLMAKIGMK 449 Thiobacillus denitrificans ATCC 25259
jgi:Daro_2438 402 -IDLRLVREEAERRAVATAVSRADGNMVRASEILGISRPTLYDLMHRLGLK 451 Dechloromonas aromatica RCB
CAD85035      403 -VTLREVRDKAEHEMLIKVLARVNGNVARAAELLGVTRPTLYDLMNRHGLK 452 Nitrosomonas europaea ATCC 19718
jgi:Noc_1997  401 sLNLRQIREHTEREALTRAITLVNGNLSRAAELLGVTRPTLYALLDKYEMR 451 Nitrosococcus oceani ATCC 19707
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