Conserved Protein Domain Family
DNA_bind_RsfA

?
TIGR02894: DNA_bind_RsfA 
transcription factor, RsfA family
In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO. [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination]
Statistics
?
PSSM-Id: 274342
Aligned: 7 rows
Threshold Bit Score: 203.844
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
WP_010898732   3 ANRQDAWTNDEDLILAEVVLRHIREGSTQLAAFEEVGERLSRTAAACGFRWNSAIRKKYEAAIALAKKQRK--------H 74  Bacillus halodu...
WP_009879647  29 KTRQDAWTKEDDLLLAETVLRHIRSGSTQIKAFDEVGDALNRTSAACGFRWNAEVRPNYEDAVQLAKKQRK--------E 100 Bacillus anthracis
ESU71225      22 KTRQDAWSHEEDVLLAETVLQYIREGKTQLAAFEVVGRQLHRTAAACGFRWNAEVRKRYLEAIEQAKKQRK--------E 93  Geobacillus sp....
WP_000868347   2 KVRQDAWTDEDDLLLAETVLRHVREGSTQLNAFEEVGDKLNRTSAACGFRWNAVVRYSYEQALQLAKKHRK--------D 73  Bacillus cereus...
WP_000246474   3 TTRQDAWTDDEDLLLAEVVLRHIREGGTQLSAFKEVGRHLSRTPAACGFRWNSYVRKQYKERIEEAKQLRKvehyevkeT 82  Bacillus thurin...
BAM52156       5 ITRQDAWTQDEDLLLAEVVLRHIREGGTQLSAFEEVGRALTRTAAACGFRWNSYVRKQYQSGIELAKKQRK--------E 76  Bacillus subtil...
WP_010897424   2 KVRQDAWSHEDDVFLAETVLKHIEEGSTQLRAFDEVGDVLNRTSAACGFRWNAVVRQRYVKQIAEAKKERK--------R 73  Bacillus halodu...
WP_010898732  75 SKQVKkevsepvetvevameveakpqk-----rqqnqvevveeqqvssqvdengG------------------------- 124 Bacillus halodu...
WP_009879647 101 LKRSE-------------------------------------------------Akiekehftktkqlvidaefsediap 131 Bacillus anthracis
ESU71225      94 RKRAL-------------------------------------------------E------------------------- 99  Geobacillus sp....
WP_000868347  74 KMRAAsgeqakkrllytppasgaitdydalvqeettvqykeaipyqestvpaakG------------------------- 128 Bacillus cereus...
WP_000246474  83 KVLEP-------------------------------------------------K------------------------- 88  Bacillus thurin...
BAM52156      77 LRKQI-------------------------------------------------Gvhsvnmpnsmk------qtasasse 101 Bacillus subtil...
WP_010897424  74 RKRa--------------------------------------------------A------------------------- 78  Bacillus halodu...
WP_010898732 125 ---S---------------------------------ITMEKVIAFLKNQQTLLGQDQRLQKEKQQLLDENETLRKENAR 168 Bacillus halodu...
WP_009879647 132 skqE---------------------------------LTMQNVISFLQNLEHTNPSLAKLQTENDVLQAQLTSLQKTNDE 178 Bacillus anthracis
ESU71225     100 ---MmkkwqkdstvaawspsgerdgaegsspflpaapLTLEQCISFLQTLRRGIEEMEAIRQDNERLKRERAEWQTRNEQ 176 Geobacillus sp....
WP_000868347 129 ---S---------------------------------MTMQDVIYFLQTVGSSNIKVTALENENTRLKQEMKAQILRNEE 172 Bacillus cereus...
WP_000246474  89 ---L---------------------------------ITLNDVIDFLQNYKD---------------ENSLMVLQQQIES 117 Bacillus thurin...
BAM52156     102 gkrD---------------------------------LSIQDVIQFLEQFKET-PSAQEFQLEREKLKEQIQSLQKELED 147 Bacillus subtil...
WP_010897424  79 ---Syayqlyptasq-----------qpvvltgeatsLTLPMVIEFLQQLATHQVADGQTRKEQEELMKQNEQLQERNKE 144 Bacillus halodu...
WP_010898732 169 LEKEIKKMRQEKMTIAEDYQTLISIMDRARKLSLVGQEN 207 Bacillus halodurans
WP_009879647 179 LETKLAVLTKKQQAIEEDYAMLVRIMDRARKLVSVEEQE 217 Bacillus anthracis
ESU71225     177 LAQKLERLETRQTTVQEDYEALVKIMARARQLASEEGDR 215 Geobacillus sp. MAS1
WP_000868347 173 LEKKLEKLEKQSHTVQEDYETLMNIMNRARKLAVMDDEE 211 Bacillus cereus group
WP_000246474 118 LQTEKESLLERLSVYEEEYRTLLDYIDQKRSVMVAERNS 156 Bacillus thuringiensis
BAM52156     148 LRSENQTLRNQLEMTEEDYKALIDIMDRARKMVVSKEDG 186 Bacillus subtilis BEST7613
WP_010897424 145 LEKELQKIKQEHSIIEEDYQSMIQIMNRARRMAILQDDE 183 Bacillus halodurans
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap