4U3E


Conserved Protein Domain Family
RNR_anaer_Bdell

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TIGR02827: RNR_anaer_Bdell 
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anaerobic ribonucleoside-triphosphate reductase
Members of this family belong to the class III anaerobic ribonucleoside-triphosphate reductases (RNR). These glycine-radical-containing enzymes are oxygen-sensitive and operate under anaerobic conditions. The genes for this family are pair with genes for an acitivating protein that creates a glycine radical. Members of this family, though related, fall outside the scope of TIGR02487, a functionally equivalent protein set; no genome has members in both familes. Identification as RNR is supported by gene pairing with the activating protein, lack of other anaerobic RNR, and presence of an upstream regulatory element strongly conserved upstream of most RNR operons. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 274318
Aligned: 6 rows
Threshold Bit Score: 878.369
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4U3E_A         47 FQXDGLGDQLDvvkFTEDF--VRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKXKEXFGKGVADEFVE 124 Thermotoga mar...
CAE80388        4 LTEEQIQKKIE---FVQQYkaASNAAEGSKLDANANVTLKNIATLEAEINKDINIQINRSLVAGKIADLFGPDLAKEYVR 80  Bdellovibrio b...
AAD35470       27 FQMDGLGDQLDvvkFTEDF--VRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKGVADEFVE 104 Thermotoga mar...
WP_010944414    4 LQPNQLKDKLN---FIEQYlnAKNAADGSKMDANANITQKNIATMENEMMKDFFVQINRAKVSNKIAELFDAELASEYLR 80  Haemophilus du...
WP_014708597   87 TEDREVLEKMR---FLTDYchAENAATGSKFDANANVENKNIATLIGELPKQGFIRLNRRLLTDRIKRMYGKELSDEYLH 163 Prevotella int...
tigr:CPS_0092   4 LNEEQITNKKD---FIKQYfsAKNAADGSKMDANANVSHKNIATLEAELLKDCFVQINRALVHDKIRDTFDADLAKEYLR 80  Colwellia psyc...
4U3E_A        125 AQINGAVYLHDrhHAALXPYCFAYTLKPIVEKGLPFIKTiKSEPAKHLSTFIQHVIQFVXFASNQSSGAVGLPDFFVWXW 204 Thermotoga mar...
CAE80388       81 QIESHEIYVHD--ETSLKPYCASISMYPLLLQGLKDLGG-ESKAPQHLESFCGCFVNLVFAVSAQFAGAVATVEWLMYFD 157 Bdellovibrio b...
AAD35470      105 AQINGAVYLHDrhHAALMPYCFAYTLKPIVEKGLPFIKTiKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMW 184 Thermotoga mar...
WP_010944414   81 QIEHHEIYVHD--ETSLKPYCVSVTMYPFLRYGLTKFGG-ESKAPKHLASFCGSFVNFVFAVSSQFAGAVATVEFLTYFD 157 Haemophilus du...
WP_014708597  164 LLTHHFIYKND--ETNLANYCASITMYPWLISGTASIGG-NSTAPTNLKSFCGGFINMVFMVSSMLAGACATPEFLMYMN 240 Prevotella int...
tigr:CPS_0092  81 QIEDHEIYVHD--ETSLKPYCTSISMYPFLLDGLTKLGG-ESKAPKHLESFCGSFVNLIFAISAQFAGAVATVEFLTYFD 157 Colwellia psyc...
4U3E_A        205 YFVKKDLKEGI-----------IPRDKLDwyIEQHFQILTYSLNQPI--RTTQSPYTNFTYLDRNYIKAIFEGERYPDGS 271 Thermotoga mar...
CAE80388      158 HFARLDYGDDY-----------LKTHRRI--INNHLQHVVYALNQPAaaRGYQSVFWNISAYDEYYFKSLFGDFVFPDGD 224 Bdellovibrio b...
AAD35470      185 YFVKKDLKEGI-----------IPRDKLDwyIEQHFQILTYSLNQPI--RTTQSPYTNFTYLDRNYIKAIFEGERYPDGS 251 Thermotoga mar...
WP_010944414  158 YFARKDFGDDY-----------LETHKQE--ICNHLQQVVYSINQPAaaRGYQSVFWNISLYDKYYFEAMFSQFVFPDFE 224 Haemophilus du...
WP_014708597  241 YFIQQEYGKDYwqhpekvvdlsLKQRTIDkiITDFFEQIVYSLNQPTgaRNYQAVFWNISYYDKFYFESLFGNFYFPDGS 320 Prevotella int...
tigr:CPS_0092 158 YFARLEYGNDY-----------LSTHKSE--IENHLQHVVYAINQPAaaRGYQSVFWNISLFDQHYFASMFGEFVFPDFS 224 Colwellia psyc...
4U3E_A        272 LitDHVEDIIALQKHYWEWVSRERERQXFTFPVLTASLLYKDGKFLDEDSARFINKINXKWQDTNWYISDSIDAVASCCR 351 Thermotoga mar...
CAE80388      225 L--PRWDSVKKLQSHFMSWFNDERKKAILTFPVVTAAMLVDDKGPRDLDFATMCADELSRGNSFFMYMSDSADSLASCCR 302 Bdellovibrio b...
AAD35470      252 LitDHVEDIIALQKHYWEWVSRERERQMFTFPVLTASLLYKDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCR 331 Thermotoga mar...
WP_010944414  225 R--PNWQTTAKLQLFFMKWFNQERTKAILTFPVITAAMLTEHGQCKDNQFADQMAEELSQGNSFFIYQSDNPDSLASCCR 302 Haemophilus du...
WP_014708597  321 Q--PDWEGVSWLQKRFMTWFNQERTKAVLTFPVETMALLSENGECRDTEWADFAAQMYADGHSFFTYMSDNADSLSSCCR 398 Prevotella int...
tigr:CPS_0092 225 K--PNWQTVDQLQQFFLGWINKEREQAVLTFPVVTAAMLTENGQCKDLDFARKLAQQKAEGNSFFIYLSDSADSLASCCR 302 Colwellia psyc...
4U3E_A        352 LTSSTQTlKKFSLsseeeeklkgrxnS-------------IGGSDLNIGSFKVITVNLPRIALESGGdrekylqiLRHRV 418 Thermotoga mar...
CAE80388      303 LRNEISD-NTFSY-------------S-------------LGAGGVATGSINVITINMNRLVQKNLD--------LAEMV 347 Bdellovibrio b...
AAD35470      332 LTSSTQTlKKFSL-------------SseeeeklkgrmnsIGGSDLNIGSFKVITVNLPRIALESGGdrekylqiLRHRV 398 Thermotoga mar...
WP_010944414  303 LRNEIAD-HTFSY-------------S-------------LGAGGVATGSINVITINMNRLVQDKRD--------LAKEV 347 Haemophilus du...
WP_014708597  399 LRNEIQD-NGFSY-------------T-------------LGAGGVSTGSKSVLTINLNRCIQYAVNknidykeyLSHVI 451 Prevotella int...
tigr:CPS_0092 303 LRNEISD-NTFSY-------------T-------------LGAGGVATGSINVITVNMNRLVQDGRD--------LKTEI 347 Colwellia psyc...
4U3E_A        419 QLIKKALAAVREIIKERISEGLLPLYENGLXLLNRQYGTIGVTGVWESASIXGLTtedidgLKYTEEGEVFVDNVLDTIr 498 Thermotoga mar...
CAE80388      348 DKVQKYQVAYRQLMQEYFEAGLLSAYSAGFITLTKQFLTIGINGMVEAAEFSGLS------VENSAAYKDFVREKLKVIy 421 Bdellovibrio b...
AAD35470      399 QLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTtedidgLKYTEEGEVFVDNVLDTIr 478 Thermotoga mar...
WP_010944414  348 EKIHKYQYAYRKLMEDYLAAGMLPAYDAGFITLDKQFLTIGINGMAEAAESQGLT------VGYNQEYIDFVQSRLNVIf 421 Haemophilus du...
WP_014708597  452 DLCHKVQMAYNENLKDLLHHHMLPLFDAGYINIDRQYLTIGINGLVEAAEFMGLD------ITPNDEYKEFVQGVLGLI- 524 Prevotella int...
tigr:CPS_0092 348 EKIQKYQVAYRKLMQEYQAQGALSVYDAGFISLDKQFLTIGINGMAEAAEFAQIK------VGNNEEYKQFVSTHLKVIy 421 Colwellia psyc...
4U3E_A        499 EEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRfLFGEKQPFEIYSNQWVPLXAN-TDVLNRIRYSGK-WDKKVSGGAIL 576 Thermotoga mar...
CAE80388      422 DANRKAREKYGFMFNTEFVPAENLGVKNAQWDR-KDGLFVPRDCYNSYFYVVENDgVNPLDKMDLHGKeMMQYLDGGSAL 500 Bdellovibrio b...
AAD35470      479 EEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRfLFGEKQPFEIYSNQWVPLMAN-TDVLNRIRYSGK-WDKKVSGGAIL 556 Thermotoga mar...
WP_010944414  422 VANQTASQQYGVKFNTEFVPAENLGVKNAKWDK-QDGYFVPRDCYNSYFYLVEDQqINALDKFLLHGKqLIEWLDGGSAL 500 Haemophilus du...
WP_014708597  525 ETYNKQYRTKEAMFNCEMIPAENVGVKHAKWDK-ADGYFVPRDCYNSYFYRVEDNsLTILDKFRLHGApYIEHLTGGSAL 603 Prevotella int...
tigr:CPS_0092 422 QANQAAKKEFGYMFNTEFVPAENLGIKNAKWDK-KDGYQVSRECYNSYFYVVEDEaTNHIDKFVMHGQeMTQYLDGGSAL 500 Colwellia psyc...
4U3E_A        577 HINLGESFkTEEESFNXVKXIADXGVXYFAFNTKISVCEDGHAFYG---ERCPVCGKAKVDEYXRIVGYLVPVSAFNKEr 653 Thermotoga mar...
CAE80388      501 HLNLEERL-TSDGFLKLIRAAALSGCNYWCVNIKITICNVCEHIDKrtlYKCSECGSQDIDHATRVIGYLKRVSAFSKS- 578 Bdellovibrio b...
AAD35470      557 HINLGESFkTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYG---ERCPVCGKAKVDEYMRIVGYLVPVSAFNKE- 632 Thermotoga mar...
WP_010944414  501 HLNLDESL-SKVGYRSLLDIAAKTGCNYFCVNVKITICNECHYIDKrtlHHCGKCGSANIDYGTRVIGYLKRVSAFSSA- 578 Haemophilus du...
WP_014708597  604 HMNLDEHL-SQAQYRQLMRVAAEEGCNYFTFNIPNTVCNECGHIDKrnlKECPHCHSENVDYLTRVIGYMKRVSNFSAA- 681 Prevotella int...
tigr:CPS_0092 501 HLNLDESL-STDAYLKLFNVAAATGCNYFCINVKITICNECDKIDKrtlHLCSSCGSENIDHGTRVIGYLKRVTAFSQG- 578 Colwellia psyc...
4U3E_A        654 R-EIEYPRRQF 663 Thermotoga maritima
CAE80388      579 R-QIEAAKRFY 588 Bdellovibrio bacteriovorus HD100
AAD35470      633 RrEIEYPRRQF 643 Thermotoga maritima MSB8
WP_010944414  579 R-QQEHSLRFY 588 Haemophilus ducreyi
WP_014708597  682 R-QTEAGKRYY 691 Prevotella intermedia
tigr:CPS_0092 579 R-QKEHALRHY 588 Colwellia psychrerythraea 34H
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