Conserved Protein Domain Family
pfaD_fam

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TIGR02814: pfaD_fam 
PfaD family protein
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Statistics
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PSSM-Id: 274312
Aligned: 9 rows
Threshold Bit Score: 712.23
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAN85520  352 QRAEELGSAEFRQDYGIRYAYLAGAMFRGIASAELVIRMGRAGLMGFFGAGGLGLDKVESALVRIKDALGPDGrYGMNLL 431  Streptomyces atro...
AAK57802   65 LAPSALGDPDFLAHYDLRFPYMAGAMANGIASPDLVIALAQQGFLASYGAGGVRLEQFDQALAKITSAFQGAP-FSVNFI 143  Agrobacterium vitis
AAK72880 1583 CNIADLGSRAFMKTYGVSAPLYTGAMAKGIASADLVIAAGRQGILASFGAGGLPMQVVRESIEKIQAALPNGP-YAVNLI 1661 Schizochytrium sp...
AAL01063   80 LGTQSLGDNDFRRVHGVKYAYYAGAMANGISSEELVIALGQAGILCSFGAAGLIPSRVEQAINRIQAALPNGP-YAFNLI 158  Photobacterium pr...
AAM12912  638 LTAEGLGSAAFRQAYNLRYAYMAGGMYKGIASVELVVKLVNSGYLAFFGAGGLSTAAVEQAIVEIAQRTQP-RaFGMNLV 716  Pseudomonas fluor...
AAS47558    2 ITAEKLGSRLFKEDYQVRYAYVAGAMAKAIGSSDLVIAMGKAGYVGFYGAGGMTLEEIETAIQRIQQGLNRGEpYGINVL 81   symbiont bacteriu...
AAY32968  393 ISLEVLGSAAFREDYRLRYAYVAGSLVDGISSKEMIVRMGKAGLIGYLGTKGVALDAVEASILHIQRELRGGEsYGVSLW 472  Sorangium cellulosum
CAB13584  310 ITAESLGSAEFKQDYHLTYAYLAGGMYRGIASKEMVVKLSRAGMMGFFGTGGLSLKEVEDAIHAIQGELGKGQaYGINLV 389  Bacillus subtilis...
CAB52352   63 LYPEWLGGRTFCEAHGVRFPYVAGEMANGIATTGMVAAMARAEMIGFFGAGGLPLPEVERAVHSLAQELESRTnWGVNLI 142  Streptomyces coel...
AAN85520  432 HSIDDPAYEHAVVDLCLKHGVHDVEAAGFTQLTPAVVQFRFSGAHRDAAGRAVAVRRVLAKVSRPEVAAAFMAPAPAAIL 511  Streptomyces atro...
AAK57802  144 HSPSEPAMENGLIDILLRYGVTIVEASAFMGLTPALVRYRALGLRRREDGSIDIGHRLIAKVSRSEVASVFMEPAPENIL 223  Agrobacterium vitis
AAK72880 1662 HSPFDSNLEKGNVDLFLEKGVTFVEASAFMTLTPQVVRYRAAGLTRNADGSVNIRNRIIGKVSRTELAEMFMRPAPEHLL 1741 Schizochytrium sp...
AAL01063  159 HSPSEPALERGSVELFLKHKVRTVEASAFLGLTPQIVQYRAAGLSRDAQGEIVIANKVIAKVSRTEVAIKFMEPAPAKML 238  Photobacterium pr...
AAM12912  717 CNLSNPHKEIELVELFMRKGVTVIEAAAFMQITPALALYRLRGL-IKVGDRIEARHRIVAKVSRPEVAQQFLDPAPARVV 795  Pseudomonas fluor...
AAS47558   82 ANLADLEKENHLIDLLLRYGVRHIEAAAFMQITPALVTFRLKGLHLDASGKVQAANTLMAKVSRPEIAQLFLSPVPASIV 161  symbiont bacteriu...
AAY32968  473 CDMDDSHLEWQSVALYLKHDIRYVEAVAYMQITPALVCYRLKGAHRDHRGRAATPRRVLARVSNLEVARAFMSPAADHVL 552  Sorangium cellulosum
CAB13584  390 HNMKHTESEEKMIDLLLRNQVSIVEASAFLSVTPVLVRYRAKGVKRNQNGDVICSNRLIAKISRPEVAESFLSPAPENML 469  Bacillus subtilis...
CAB52352  143 HSPAEPELEWRVAELLLRCGVPRISVSAFMELTPAVVLCSAQGLRRGADGGVVRRTRLLAKLSRPEVAERFLSPAPPALL 222  Streptomyces coel...
AAN85520  512 RRLTADGRLTPQEAEIAAELPVGQDICVEADSGGHTDGGAALTLLPSMIRHRDAAMARHGYGRRI--RIGAAGGIGAPEA 589  Streptomyces atro...
AAK57802  224 KKLLAQGAISEEQAALAAQVPIADDITAEADSGGHTDRRPLVVLLPILLRQAQKVAEKNGYAKPI--RIGVGGGLGSPKA 301  Agrobacterium vitis
AAK72880 1742 QKLIASGEINQEQAELARRVPVADDIAVEADSGGHTDNRPIHVILPLIINLRDRLHRECGYPANLrvRVGAGGGIGCPQA 1821 Schizochytrium sp...
AAL01063  239 QGLVDEGRITAEQMELALLVPMADDITAEADSGGHTDNRPLVTLLPTILALKETIQAKHQFKTPL--RVGSGGGIGTPDA 316  Photobacterium pr...
AAM12912  796 EKLLAQGLVTPEQAQWAQSVPMADDLVVEADSGGHTDMGVTVVLLPTIIRLRDSLCQAAGYTERV--RVGAAGGIGSPES 873  Pseudomonas fluor...
AAS47558  162 SLLLTEGRINEQEAELAGRIAVASDVCVEADSGGHTDMAVTSVVLPRIIRLRDTLQQQYRFQSPV--RVGSAGGIGTPES 239  symbiont bacteriu...
AAY32968  553 DQLVKDGRLTREEGALGRELPISDDLCAHADSGGPTDMGTAAVLMPAMARLRDDMMTRYGYEKRI--RVGMAGGLGAPEA 630  Sorangium cellulosum
CAB13584  470 QKLLGENKITMNEAELLRCIPMADDICVEADSGGHTDGGVAYSLMPAMTSLRDEMMKKYQYRKKI--RVGAAGGIGTPEA 547  Bacillus subtilis...
CAB52352  223 DLLVARGSLTREEAALAALVPVAEDITVEADSGGHTDNRPLSVLLPRIAALRDTVCRRFGYRRPV--RLGAAGGLGTPDA 300  Streptomyces coel...
AAN85520  590 VAAAFVLGADFVLTGSVNQCSPEAGTSDAVKDILAGLDVQDTAYAPAGDMFEIGARVQVVRKGTLFAARGNKLYQLYRSH 669  Streptomyces atro...
AAK57802  302 IAAAFATGAAYVVTGSFNQACQESGSSPSVRALLAKCGFADTTMAPVADMFELGVELQVLKRGTLFASRAKMLYDLYRRY 381  Agrobacterium vitis
AAK72880 1822 ALATFNMGASFIVTGTVNQVAKQSGTCDNVRKQLAKATYSDVCMAPAADMFEEGVKLQVLKKGTMFPSRANKLYELFCKY 1901 Schizochytrium sp...
AAL01063  317 ALAAFNMGAAYIVTGSINQACIEAGASEHTRKLLATTEMADVAMAPAADMFEMGVKLQVVKRGTLFPMRANKLYEIYTRY 396  Photobacterium pr...
AAM12912  874 VAAAFMLGADFVVTGSINQCTPEAGTSDVVKTLLQDINVQDTDYAPAGDMFELGARVQVLKRGVFFPARANKLYDLWRRY 953  Pseudomonas fluor...
AAS47558  240 AASAFMLGAEFIVTGSINQCTVQAGTSETVKKMLQSIDVQDTAYAPAGDMFELGSKIQVLKKSVFFPVRANRLYDLWRNN 319  symbiont bacteriu...
AAY32968  631 VASAFMLGADFIVTNSVNQCSPEASTSDRVKDMLQAASVHDTAYAPAGDLFEMGARVQVLKRGVLFPARANRLYELYRHY 710  Sorangium cellulosum
CAB13584  548 AMAAFMLGADFILTGSINQCTVEAATSDKVKDLLQQMNVQDTAYAPAGDMFESGSKVQVLKKGVFFPARANKLYELYQRY 627  Bacillus subtilis...
CAB52352  301 VAAAFALGASYVVTGSVNQTAVEAGLSDEAKAMLCDADVADVAMAPSADMFELGVKLQVLSRGTMFARRAGRLYSAYRDH 380  Streptomyces coel...
AAN85520  670 DSWESIDAGTRRSVEETYFKRPFAEVWEETRAYHLGRg-RDAEIEKADRLPKHRMALAFRWYFARSVRWGLEGEPTQKVN 748  Streptomyces atro...
AAK57802  382 DSLDALPEPVVQELEQKLFKQSLADVWRMTADYFIGR--DPKQVTEAEADPKRKMALVFRAYLGKASHWANAGEEGRQID 459  Agrobacterium vitis
AAK72880 1902 DSFESMPPAELARVEKRIFSRALEEVWDETKNFYINRlhNPEKIQRAERDPKLKMSLCFRWYLSLASRWANTGASDRVMD 1981 Schizochytrium sp...
AAL01063  397 DSIEAIPADERHKLETQVFHSTLDAIWEGTVAHFNER--DPKQIERAQGNPKRKMALIFRWYLGLSSRWSNTGEAGREMD 474  Photobacterium pr...
AAM12912  954 DSLDELDEKTARQIQDSFFKRSFDEVFEETRAYYSKv--APQEIDKALSNPKHKMALVFRWYFIHSTRLAMTGSEAQRVD 1031 Pseudomonas fluor...
AAS47558  320 GSLEQLAPTVRKELQDKYFKRSFDDIYQETERYYRKa--SPAHIEKAERDPKLKMALIFRWYFVHTMRLALEGNHEQRTD 397  symbiont bacteriu...
AAY32968  711 PSLDALDARTRDQLEKHYFRRDLDDVWRDALSRRPGt--RPADAARTERDPKHRMSLVFRWYFAHCSELARRGDEENRVN 788  Sorangium cellulosum
CAB13584  628 GSIRELDAKMLAQLEEKYFKRSIEDIYKDIALHY-----PAADIEKAEQNPKHKMALIFRWYFRYSSKLAISGSEHSKVD 702  Bacillus subtilis...
CAB52352  381 GSLEEIPPALRAAIERDVLGAPFEEVWQRTRAFWEER--DPAEAVRAEADPRHRMALVFRWYLGSSSRWAITGESTRRAD 458  Streptomyces coel...
AAN85520  749 YQIQCGPAIGAFNHVVRGTGLE---DWRHRHVDLIAEHLMTGAADVLARR 795  Streptomyces atroolivaceus
AAK57802  460 YQIWSGPAIGDFNEWTAGTYLE---QPEGRRVVDVATHLLQGAAFETRLH 506  Agrobacterium vitis
AAK72880 1982 YQVWCGPAIGSFNDFIKGTYLDpavANEYPCVVQINKQILRGACFLRRLE 2031 Schizochytrium sp. ATCC 20888
AAL01063  475 YQIWAGPALGAFNAWAKGSYLD---NYQDRRAVDLTKHLMHGAAYLARVN 521  Photobacterium profundum SS9
AAM12912 1032 YQVHCGPSMGAFNQWVKGTDLE---DWRNRHVDLVAERLMNAAAAYLNTR 1078 Pseudomonas fluorescens
AAS47558  398 YQIHTGPALGAFNRWVKDTPLE---DWKNRDVTKMADYLMDACAEYLNKR 444  symbiont bacterium of Paederus fuscipes
AAY32968  789 YQVHCGPAMGAFNQWAKGTDLE---DWRNRHVDVIAERLMRASADLLDHR 835  Sorangium cellulosum
CAB13584  703 YQIHCGPALGAFNQWVKGSQLE---NWRNRHVDEIGKKLMTETAVLLHER 749  Bacillus subtilis subsp. subtilis str. 168
CAB52352  459 YQIWCGPAMGAFNRWAAGTFLA---EPPHRSVTQIALNLLEGAATLTRAH 505  Streptomyces coelicolor A3(2)
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