Conserved Protein Domain Family
cas6_cmx6

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TIGR02807: cas6_cmx6 
CRISPR-associated protein Cas6, subtype MYXAN
Members of this protein family resemble the Cas6 proteins described by TIGR01877 in having a C-terminal motif GXGXXXXXGXG, where the single X of each GXG is hydrophobic and the spacer XXXXX has at least one Lys or Arg. Examples are found in cas gene operons of CRISPR regions in Anabaena variabilis ATCC 29413, Leptospira interrogans, Gemmata obscuriglobus UQM 2246, and twice in Myxococcus xanthus DK 1622. Oddly, an orphan member is found in Thiobacillus denitrificans ATCC 25259, whose genome does not seem to contain other evidence of CRISPR repeats or cas genes.
Statistics
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PSSM-Id: 274308
Aligned: 6 rows
Threshold Bit Score: 252.318
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
chgcsh:AE010300_2430   4 PNVIELNFPVLGSLLPADHGYGLYSAICHLCPTLHEHDS-LSIQTISGLPdRPG--ILRLTANSQLRIRIPVEQIPLVYP 80  Leptosp...
WP_011320207          27 FPYMDLTFSLTGETLPFDHGYELFSAIAHFEPKLHTLDT-LGIQTIAGIP-KDG--VINLTQNSRLRIRIPVNQVRLVYP 102 Anabaen...
WP_011312999          16 PRLIDLQFELAGSTIPADNAQMLCDALLGVLPWLGEDPG-SGIQHLKGAAtNSGdtVLNINRRTRLFMRVPKTRVDDMQR 94  Thiobac...
WP_011557184          28 MVFVDLLFPVQGGPVPLDHAYLLFSALSRHLPALHERSD-MGVFSLRGVSnTRE--LLYLG-RGTMRLRCPIEAVATLLP 103 Myxococ...
WP_011557195           1 MTSLDLLYPVRGGPVPLDHGYALFSALCTRVPALHERLD-LGVFTLRGERaVGD--LLHLG-RGTLRLRCSPEVVPLLLS 76  Myxococ...
WP_029600619           5 APVVDLVFPVRGGSVPTDHAYPLYGALSGAVPAFHDAQQsLRFAPLTGVRdEAG--RLRLAPWSRLRVRLPAEAIPNVLP 82  Gemmata...
chgcsh:AE010300_2430  81 LAGKSLTIGIHKIQLSIPAIRILQPYSVLKSRITVIKGFSEPETFLEAAQKQLNAREISGRVIL-------Lqdpk---- 149 Leptosp...
WP_011320207         103 LAGKSLRIGKHTIRLGIPDICLLQPAEKLRSRIVVIRGYEEPESFLVVAQRQLEQLGIQAIASIptkangkP-------- 174 Anabaen...
WP_011312999          95 LIGEQLDLGGHALRIGSFKTRDFSPFANIYAHFIDTGSATEEQFVQDVMRELDSRFQLRCGFIC-------G-------- 159 Thiobac...
WP_011557184         104 LVSAPLEIAGRRLSLGAPSLHALEPVPSLFARLVTFKHAMDEAAFVAAASRALEALGVQATLKV-------G-------- 168 Myxococ...
WP_011557195          77 LPLTPLNVAGREVVLGAPVLRALEPASSLFARIVTFKHALDAASFLRGVSRSLEALACDARPVL-------G-------- 141 Myxococ...
WP_029600619          83 LASRALDVAGARVALGAPSVEALVPAPALESWLVTFKHGEEPAAFLATTRARLTELGVAGEPAV-------Rafesgpra 155 Gemmata...
chgcsh:AE010300_2430 150 gnpKRNTIKIKRFTIVGFGLKVEGLNEKDSLELQVTGLGGKRRMGCGVFYG 200 Leptospira interrogans serovar Lai s...
WP_011320207         175 ---IRRTIKIKRFTVVGFGLEVINLSDEDSLRLQIHGVGGKQKMGCGLFMP 222 Anabaena variabilis
WP_011312999         160 ---KQQTLQSASGPLFGHSLMLHDVPPHKSLQLQDEGLGRNRLLGCGIFIP 207 Thiobacillus denitrificans
WP_011557184         169 ---RRRIVRITGKKVVGFALELHGLSAEHSLRVQEQGMGGRRHMGCGLFLP 216 Myxococcus xanthus
WP_011557195         142 ---RRRLVRIAGKRVVGYALELHGVSGEDSLRVQAQGLGGRRHMGCGLFLP 189 Myxococcus xanthus
WP_029600619         156 gevRRRVVRVSGAAIVGYALLVSGLTAEESIRLQERGLGGRTKIGCGFFLP 206 Gemmata obscuriglobus
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