Conserved Protein Domain Family
Ku_bact

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TIGR02772: Ku_bact 
Ku protein, prokaryotic
Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion. [DNA metabolism, DNA replication, recombination, and repair]
Statistics
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PSSM-Id: 274290
Aligned: 15 rows
Threshold Bit Score: 324.232
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
chgcsh:XC0108   2 ARPIWTGTLSFGLLNVPVSLMSGER-K-VDLHFRMLDSRDKKPIRFERVNADTGDEVPWKEIVKAFEYDKGSYVIVEEQD 79  Xanthomonas ca...
BAB51223        3 PRPAWKGYLKLSLVTCAVELTNVVThT-ERVSFRILNRKTGNTVKRIYVDAETGKPLDDGDEIKGYELDDGDFVRIEEDE 81  Mesorhizobium ...
SU:SMa0426      3 LRPYWKGYLKLSLVTCPVQMMPATSeS-EKVRFHTLNRQTQNRVVSHYVDSVTGKEVKEEDEVKGYQRGEHEYVILEDEE 81  Sinorhizobium ...
CAB13198       18 MHTMWKGSISFGLVNIPIKLYAATE-D-KDIKLRSLHKEDHAPIKYEKVCTNCEKTLSPDEIVKGYEYVKGKYVVLTDED 95  Bacillus subti...
BAD40783        4 LRAMWKGTISFGLVTIPVKLYAATE-S-KDLRFNLLHEPCQTPVQYRKYCPTCEREVESGEIVKGYEFDRGRYVTLRDED 81  Symbiobacteriu...
AAB89525       34 MRATWKGSISFGLVNIPVKVYKATT-Q-KEIQFHLLHSADGGRIRYRKVCEKCGKEVSDGEIVKGYEISKNEYVILTDED 111 Archaeoglobus ...
CAB45615        4 VRSIWNGAISFGLVSIPIKLVNATE-S-HSVSFRQIHTEDGGRIRYRKVCELEDREVTQAEIGKAYEDADGSMIPITDED 81  Streptomyces c...
CAB08491        1 MRAIWTGSIAFGLVNVPVKVYSATA-D-HDIRFHQVHAKDNGRIRYKRVCEACGEVVDYRDLARAYESGDGQMVAITDDD 78  Mycobacterium ...
WP_015008133    3 PRASWKGYIRLSLVSCPVRLYPATSaS-ERISFNQLHKDTHNRINMKPVDPELG-LVERSDLVKGYEYEDKKYIIIEDSD 80  Sinorhizobium ...
WP_011089513    3 PRAYWKGTLKLSLVSCPVVLYPATT-AaEKTRFHMINRETGNRLKQQMVDSETGDVVESDQKGRGYELRKGKYVEIEPEE 81  Bradyrhizobium...
chgcsh:XC0108  80 IRSAAPESH-ETVEVETFVDAADIDPRYFEKPYILVPG-KKAEKGYVLLRETMRDTGKVGIAKVVIRTREYLAAVMPQGD 157 Xanthomonas ca...
BAB51223       82 IEAVQIESS-HTMSLDGFVDKASIQQIYLDTPYYVAPAdKVSEEAFAVIRDAMAGKKMAGLARIVLYQRERPVVIEPLGK 160 Mesorhizobium ...
SU:SMa0426     82 LENVALEST-KTIDISTFTPRDSIEWIWLDTPYCLSPNdPVGQEAFSVIRDAMEAQNMVGISRLVISRRERAVMLEPRGK 160 Sinorhizobium ...
CAB13198       96 LKSLKQEHEeKAVEIVDFVQLQEIDPIYFNRSYFVGPG-DNGTKAYTLLREALRSTGKIGIANMTIRSKQQLAILRVYEN 174 Bacillus subti...
BAD40783       82 FESIPLAAR-RTLEIVAFVRLEEIDPIYFDKTYYLEPG-EGGAKAYGLLRHAMEVTGRVAIARVVLRAKESLAALRVFRE 159 Symbiobacteriu...
AAB89525      112 FEKIPLKST-KSIEIRQFFDPAELGLIYYSSFYYISPD-KGGEKAYYLLKKAMEETNSMGIGKMTMRGKENLVALRPYDG 189 Archaeoglobus ...
CAB45615       82 LSQLPIPTA-RTIEIVAFVPEDRIDPLQMGSAYYLAASgAPAAKPYTLLREALKRSNRVAIAKFALRGRERLGMLRVVGd 160 Streptomyces c...
CAB08491       79 IASLPEERS-REIEVLEFVPAADVDPMMFDRSYFLEPD-SKSSKSYVLLAKTLAETDRMAIVHFTLRNKTRLAALRVKDF 156 Mycobacterium ...
WP_015008133   81 LESVRIESN-HTMNIEAFVDAGSVDVIYQDAPYYLAPDgAMAEETFVVLREALRRSGKLAIARLVLSSRERVVTIGPRET 159 Sinorhizobium ...
WP_011089513   82 LEAVQIESN-HTIDIESFVPSDEIDQRYLDHPYYIAPDgKAAIDAFAVIRDAMKDQERVALAKIVLTNREHVMAIEPLGK 160 Bradyrhizobium...
chgcsh:XC0108 158 ----ALILLLLRYQQEVVDPEDFKLPsgaVSEYRITAKEQEMAKQLIESMSGRWQPEDYHDEFRGKLEQILRKRIQAKGG 233 Xanthomonas ca...
BAB51223      161 ----GMVLTTLRYDNTVRQPDSVFGE---IKAVKTDQEMTDLAELIIDKKKAKFDPSKFDDKYEDALLELIRAKKAGHKA 233 Mesorhizobium ...
SU:SMa0426    161 ----GIVLWTLRYGDEVRDEDSYFEA---IGDEQADSEMMPLVQQLIKKQTKDWTPKMVADPVQERLLEIIAAKKKALKP 233 Sinorhizobium ...
CAB13198      175 ----CIVMESIHYPDEVRSAAQVPGV---PDQSNVNDKELQTAITLIDELTAKFEPEKYEDTYRQALLQRVNDKLENKE- 246 Bacillus subti...
BAD40783      160 g---VLAMETMHFPDEVRPVAALTGI---AQP-ELRPQEIEMATGLIESLTMPFSPERFENTYREALLELIQAKIAGAP- 231 Symbiobacteriu...
AAB89525      190 ----GIVLAQLHYIDEVRSPLELPGW---GAVAEITEEELELAKKLILAMKKPLKLEEFRDEYKEALMQLIEAKLSGREI 262 Archaeoglobus ...
CAB45615      161 ----AIAMHGLLWPDEVRAP-EGVAP---EGGVTVRDQELDLADALMDTLG-EIDLDDLHDEYREAVEEVVAAKASGEKP 231 Streptomyces c...
CAB08491      157 gkreVMMVHTLLWPDEIRDP-DFPVL---DQKVEIKPAELKMAGQVVDSMADDFNPDRYHDTYQEQLQELIDTKLEGGQA 232 Mycobacterium ...
WP_015008133  160 ----GMFVCTLRNPNEVRGTADYFGN---IPVGKPDPEMLQLAEALIEQKTTTFDPKQYEDRYEVALMQMIREKLKGHKP 232 Sinorhizobium ...
WP_011089513  161 ----GLLGTTLRYPYELRDEDQFFDD---IKSPKITRDMVELAGHILHTKAAHFDPSKFKDQYETALKALVKRKASGKTI 233 Bradyrhizobium...
chgcsh:XC0108 234 TTQVddepaphEDATTNVVDFMSLLQKSLQANT 266 Xanthomonas campestris pv. campestris str. 8004
BAB51223      234 PKAKa------APKPSNVVNLFDALKKSLSSDS 260 Mesorhizobium loti MAFF303099
SU:SMa0426    234 QKAQgkt--apSSSPSNVVSIMDALRKSVAAEK 264 Sinorhizobium meliloti 1021
CAB13198      247 TAVTpd----kaPPREDVIDLVSALQASIDRTR 275 Bacillus subtilis subsp. subtilis str. 168
BAD40783      232 -PAEpg----paPEQGRVVDLMEALRASIRAAE 259 Symbiobacterium thermophilum IAM 14863
AAB89525      263 VVSEg---------VEEVKSLIDALKASLEAVK 286 Archaeoglobus fulgidus DSM 4304
CAB45615      232 PEARee------aAPGKVLDLMAALESSVRAAR 258 Streptomyces coelicolor A3(2)
CAB08491      233 FTAEdqp--rllDEPEDVSDLLAKLEASVKARS 263 Mycobacterium tuberculosis H37Rv
WP_015008133  233 IIAQ-------APERGNVVNLMDALKASLSQAK 258 Sinorhizobium meliloti
WP_011089513  234 ELPEpe------eRPSNVVSLMDALKQSLRGRg 260 Bradyrhizobium diazoefficiens
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