Conserved Protein Domain Family
chlamy_scaf
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TIGR02763: chlamy_scaf 
chlamydiaphage internal scaffolding protein
Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein. [Mobile and extrachromosomal element functions, Prophage functions]
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Statistics
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PSSM-Id: 131810
Aligned: 3 rows
Threshold Bit Score: 143.586
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAF39721  32 INNIVAKLN-ATGVLEHVE---RRSPRYMDCMdPMEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFLSREENYE 107 Chlamydia pneumonia...
AAP05462   2 RIIIAAKVN-AVSVLRRLE---QRSLCHVVCC-PIDCFEALNAIIEVWELFDALPAKVRECFGNDPEEMLECLNYEDKYF 76  Chlamydophila cavia...
P19194    34 IEKLVKLANqNPSYLHAFAgdpTRQPEYGECPsPLDYQDALEIVARGEEAFYSLPANIRVNFSN-PMEFLSWLEDPANYD 112 Chlamydia phage 1

AAF39721 108 EAK---------ALGFVYEDGTSGAPQTFFEADPKDDQNVANQEPGL 145 Chlamydia pneumoniae phage CPAR39
AAP05462  77 NNLenpsksvslASQILKTETKIRAIMMRIFVQRKRLKLASKKTEDF 123 Chlamydophila caviae GPIC
P19194   113 EVE---------KLGLLDPE----------KVQIRKSKLQKDQKEEV 140 Chlamydia phage 1
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