Conserved Protein Domain Family
TraF

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TIGR02739: TraF 
type-F conjugative transfer system pilin assembly protein TraF
This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Statistics
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PSSM-Id: 274274
Aligned: 8 rows
Threshold Bit Score: 325.122
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAF24162        6 NFVRLSLFSLLIGQ---DLSGGWLNRKAEGWFWYEERQKQIEee-dIKPSP--LLPSMEPPPpLTATEQMGLKRQEIEEK 79  Candidatus Pro...
AAM90720        4 IAGALALMMAASLHaapEDVLAPEYAREEGWQWYNPSAEEAE----PEPVS--PPTLQERLAsMTPSEQKKVLQQATREA 77  Salmonella ent...
CAH17345        4 RMLIVFLLLSGVAF----------ADKPVGFLWYTKERETKRvekkTSGIP--FKS-------LSYTERDAVLRFYTMEA 64  Legionella pne...
cucgc:lpg2082   4 WFFVLLVSVSPFLY----AEQPYLNEHEEGWYWHKDPKEEVKn--kPQTES--VAPSHVSKP-ADPDKTWKLIGNRVQQA 74  Legionella pne...
CAH17211        1 MSRLLMLMVWGLFVt--SLHADIVQEHAKGFHWYS----VEEap-kPIKKT--LQPRPAPVV-KSPYERLMDKRKETLNK 70  Legionella pne...
BAC97739       31 KKRLLYVIPLVLLV---QIHPTLANETPPGWRWYNEPKPALQap-kVEPLPsnTQTTISSPKtLSATEQMDWFHTMHKEA 106 Vibrio vulnifi...
CAG17952       12 LFFTTPLLVMAILT-----SPVTRAEQPPGWKWYNDPLLIKEk--aLTPPP--PTPSVTVTRtLSPTQQMQWFHRYHDDT 82  Photobacterium...
WP_002433298   12 NKALLPLLLCCFIF--------PASGKDAGWQWYNEKINPKEk--eNKPVP--AAPRQEP----DIMQKLAALQTATKRA 75  Escherichia coli
CAF24162       80 LNQAMLNPS-EENVQAYMQIQQQWINQSAQFSHIWLKNLLTYPQLDSRLTAgPVTHYGAQVQKQLLREEREGRIHSLVQS 158 Candidatus Pro...
AAM90720       78 LDTAILYPS-AENFRRFMTLQNFWTDRATDFTQTAKLARLKYPELDYNVKR-SHYNGTVEARLTEEKKVQNAVISQVAQR 155 Salmonella ent...
CAH17345       65 LHKARYTKK-MEDMRVFLSLQDYWLKESSRFKSLFQKTMLAHPEYDYAVTH-PTSNLGAKITDEVRESQTIEVINRLSKS 142 Legionella pne...
cucgc:lpg2082  75 RAQAILNPT-PENIARARRLQRLIVAQANLFSEKWMLDLLINPDQDESLIN-PSSSAARDIYNQQNSMQKEKAITQISQT 152 Legionella pne...
CAH17211       71 LAEALIAPS-FNATHEYMKAQMDYSKNNQQFVRYWQQVLLVHPELDSTLNF-PTDNSAIAVRNDAQKVLINKVIQESSVR 148 Legionella pne...
BAC97739      107 QNDAAIHPKdKEKLARFLALNRFITDQTDQLGMTFKALLLEKPELSYTKEH-PTEQAARQVYLDLENQKKTDAVEKMKQE 185 Vibrio vulnifi...
CAG17952       83 KNDALINKDdVKKAEKLMLLNQFAYNMSSDFGMTFQKALLMNPDLSYTKDR-PTEQAARSTYLQMEREKKIRAVRQLAGS 161 Photobacterium...
WP_002433298   76 LYEAILYPG-VDNFVKYFRLQNYWAQQAGLFTMSARKAMLAHPELDYNLQY-SHYNGTVRNQLAADQAQQRQAIAKLAEH 153 Escherichia coli
CAF24162      159 -FGLFFFYEGSSPISQAFSFVVKAFAKKYDWKVIAISCDGIQIPDFENYPL----HSSTLQHLGIEQFPSLYLVEPKQQK 233 Candidatus Pro...
AAM90720      156 -YGLFFFYRGNNAVDNLMAGVIRAFCEDRGISLMAVSVDGKLSDQLPQSRP----DSGQAEKMRVTHFPATFLVDPKTHQ 230 Salmonella ent...
CAH17345      143 -HGLLFFYRGKSPYDLKQIPIIVDFCKRFRIQLIPVSVDGATSPELLNSRM----DQGQANRLGVRYFPALLLVNPASQQ 217 Legionella pne...
cucgc:lpg2082 153 -SGLLYFYEGGEPFSERMAQVVSDFANSYHMTVIPIAMTNRISPMLPNSRV----DSGQATQMGVKHIPAVFALNPVSKK 227 Legionella pne...
CAH17211      149 -YGFILFYRGTSSISQKMVMHLLPFIKEYGFSMISVSTDGQLIDGLPNPKSipleTVQKQVALEAKYMPALYFVDLKSNK 227 Legionella pne...
BAC97739      186 gWGFFFVYDGKDKLSQQLAPSIQAFADQYHFELLGISNDETFITNITVNRH----NQG---KISVPFTPALILVHPSTGE 258 Vibrio vulnifi...
CAG17952      162 gWGLFFVYEGASPMAEKLAPSVQQFADAHGIEVLGISLDGTQLASIHQNRD----NSN---HIQVPFSPALVLVNPNTQE 234 Photobacterium...
WP_002433298  154 -YGIMFFYRGQDPIDGQLAQVINGFRDTYGLSVIPVSVDGVINPLLPDSRT----DQGQAQRLGVKYFPAMMLVDPKQGS 228 Escherichia coli
CAF24162      234 MVPIAFGLSSLDQIEENIILQLPPHpRNHP 263 Candidatus Protochlamydia amoebophila UWE25
AAM90720      231 WQPLAWGFMSHDDLDRQMVSVLTHF-APDY 259 Salmonella enterica subsp. enterica serovar Typhi
CAH17345      218 VSPVAYGLTTQDVLMERIKQVVNQF-KGEE 246 Legionella pneumophila str. Lens
cucgc:lpg2082 228 TMPVAYGLVSQSELKENILMASNAFqSGDY 257 Legionella pneumophila subsp. pneumophila str. Philadelphia 1
CAH17211      228 MSPVSYGFLSLEELKQRIFDVMTQFkRFSY 257 Legionella pneumophila str. Paris
BAC97739      259 MKPLAYGWISQNELLGRFYNVATNFeQSDF 288 Vibrio vulnificus YJ016
CAG17952      235 MKPLAYGFIAQEDLLGRFLNVATDF-APDF 263 Photobacterium profundum SS9
WP_002433298  229 VRPLSYGFISQDDLAKQFLNVSEDF-KPNF 257 Escherichia coli
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