1P4D,1OSB


Conserved Protein Domain Family
relax_trwC

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TIGR02686: relax_trwC 
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conjugative relaxase domain, TrwC/TraI family
This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]
Statistics
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PSSM-Id: 274258
Aligned: 9 rows
Threshold Bit Score: 372.941
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1P4D_A           13 AGNYYTDK----------------DNYYVLGSmg----eRWAGRGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQD 71   Escherichia...
CAA44853         15 AASYYEDGa---------------DDYYAKDGda----sEWQGKGAEELGLSG-EVDSKRFRELLAGNIGEGHRIMRSAT 74   Escherichia...
AAD03935         13 AADYFAN-----------------DNYYSADEhae--agVWGGEGARALGLEG-QVERDAFEGVLNGRLPDGEMVGQVEG 72   Novosphingo...
CMCP6:VV2_0663   13 AAQYYLNEentqdlpdtslekdasDNYYLKEKqqg-entFWHGKLAQEAGLLGkPVEQKTLETILSGTLNDETIKGKRED 91   Vibrio vuln...
cucgc:lpg2077    13 AAAYYLDV----------------VNYYENDSks----vRWLGDGAKILGIHGqAVEKEQMIALLKGILPDGTQLGRIDK 72   Legionella ...
CAH17351         13 AADYYSKA----------------FNYYSGDAta----mQWLGQGSQKLKLSG-VVQKEQMLALLEGRLPDGQVLQNLEG 71   Legionella ...
P14565           13 AGNYYTDK----------------DNYYVLGSmg----eRWAGRGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQD 71   Escherichia...
CAH17216         12 ALHYYTNQ----------------DNYYLSDRdslnslsRWIGRGAQKLQLSG-EIEPSQFLQLLDGQLPSGQLLGIIDK 74   Legionella ...
1OSB_A           15 AASYYEDGa---------------DDYYAKDgd----asEWQGKGAEELGLSG-EVDSKRFRELLAGNIGEGHRIMRSAT 74   Escherichia...
1P4D_A           72 GS-NRHRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSe--TVLTGNLVMALFNHD 147  Escherichia...
CAA44853         75 RQdSKERIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEArAQARQKIQGKTR---IETTGNLVIGKFRHE 151  Escherichia...
AAD03935         73 R-----RLGLDLTFSMPKSASILALVSGDRRIIDAHLAAVKSTMSQLVEkQFAESRNYERSRsgePQKTGNLVYALFAHD 147  Novosphingo...
CMCP6:VV2_0663   92 H-----KSGFDLTFSAPKNASILALVGGDSRLIEAHNNAVKFALSELEKdVAQATHTNEAGEr-eFHNTQSMIFAVVRHK 165  Vibrio vuln...
cucgc:lpg2077    73 DG-IHHRPGFDMTLTAPKSFSILLESGADPRLGEVFDKAVEWFVEEMEKeFAQARQLVDGKIe--YIDTRNLVIAAFRQP 149  Legionella ...
CAH17351         72 ----EHRPGFDMTFSAPKSVSVLVGLGLAPELVRFHDEAVQLTIRQIEKeFAETRVSRRGEIs--FEKTNNLLVAAFRQP 145  Legionella ...
P14565           72 GS-NRHRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEa-LASTRVMTDGQSe--TVLTGNLVMALFNHD 147  Escherichia...
CAH17216         75 GV-RQHRPGTDVTLSAPKSVSILALVGQDERLLQAHQEAVNITFGRIEQlAAEARITFNGETt--FEKTRNLVAAMFVHT 151  Legionella ...
1OSB_A           75 RQdSKERIGLDLTFSAPKSVSLQALVAGDAEIIKAHDRAVARTLEQAEArAQARQKIQ-GKTr--IETTGNLVIGKFRHE 151  Escherichia...
1P4D_A          148 TSRDQEPQLHTHAVVANVTQH-NGEWKTLSSdkvgk-----tgfiENVYANQIAFGRLYREKLKEQVEALGYETEvVGKH 221  Escherichia...
CAA44853        152 TSRERDPQLHTHAVILNMTKRsDGQWRALKN--------------DEIVKATRYLGAVYNAELAHELQKLGYQLR-YGKD 216  Escherichia...
AAD03935        148 TSRALDPQGHIHAVVANLTRDpKGTWKALWN--------------GEIWKNNTTIGQFYHAAFRAQLQKLGYETEaAGKH 213  Novosphingo...
CMCP6:VV2_0663  166 TSRNNDPQVHSHALAANMTRDqEGNLRTLASnlkqkgg-vingsgERIYNFQKYYTALYQSQFARESEELGFQTKgLGN- 243  Vibrio vuln...
cucgc:lpg2077   150 SSRANDPNSHTHLVVQNMTHCpDGKWRSLASdmdgq-----kgvvEQIMKHHIYGGLKFRNKLANLTKELGYQLAsDGD- 223  Legionella ...
CAH17351        146 SSRANDPALHTHCVTMNITFH-EGKARSLSSdpsre-----hgviEQIQNNAHYCGLIYRQHLANKLKETGFHLRlTGK- 218  Legionella ...
P14565          148 TSRDQEPQLHTHAVVANVTQH-NGEWKTLSSdkvgk-----tgfiENVYANQIAFGRLYREKLKEQVEALGYETEvVGKH 221  Escherichia...
CAH17216        152 TSRELDPDLHTHVPILNMTERsDGLWRSLSSrakndkehldhgfrELIYSNQHYLGLVYMSSLAKKVKELGYDIRiKDRY 231  Legionella ...
1OSB_A          152 TSRERDPQLHTHAVILNMTKRsDGQWRALKNd--------------EIVKATRYLGAVYNAELAHELQKLGYQLR-YGKD 216  Escherichia...
1P4D_A          222 GMWEMPGVP---VEAFSGRSQTIREAVGED-------ASLKSRDVAALDTRKSKQHvDPEIKMAEWMQTLKETGFDI 288  Escherichia coli
CAA44853        217 GNFDLAHIDrqqIEGFSKRTEQIAEWYAARgldpnsvSLEQKQAAKVLSRAKKTSV-DREALRAEWQATAKELGIDF 292  Escherichia coli
AAD03935        214 GSFEIKGVPaevIKAFSTRTTEIEAKIAEVga----tRLETKKQITLYTRDPKLAVeDRGALVEGWQQRAAELGFDG 286  Novosphingobiu...
CMCP6:VV2_0663  244 AQFDIDGVPeslHKAFSTRKQQIDQQVMEFg-----hDTQASRDTAALDTRQRKTYhSDSTLNHKWQQTVKGEGFDP 315  Vibrio vulnifi...
cucgc:lpg2077   224 GLWEIQGAPeqvLTHFSKRRESIEALLDEKg-----wSGAKASSIAAQKTKLDKEIiDYEKWKEDIIKECQEMGFDP 295  Legionella pne...
CAH17351        219 GLFEIDGVPdevLHEFSTRRMDILGYMDEKg-----wNGAKSASTATVLTRKNKEEhDINLLTEDWKQRAKDIGFDA 290  Legionella pne...
P14565          222 GMWEMPGVP---VEAFSGRSQTIREAVGED-------ASLKSRDVAALDTRKSKQHvDPEIKMAEWMQTLKETGFDI 288  Escherichia co...
CAH17216        232 GNFEIVGISdeaITATSKRRVQILDDMKERg-----tSSAKAAEKSNLSTRNPKTEiDSQALHQQWVDEIKDLGIDL 303  Legionella pne...
1OSB_A          217 GNFDLAHIDrqqIEGFSKRTEQIAEWYAARgldpnsvSLEQKQAAKVLSRAKKTSV-DREALRAEWQATAKELGIDF 292  Escherichia coli
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