Conserved Protein Domain Family
cas_csx11

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TIGR02682: cas_csx11 
CRISPR-associated protein, Csx11 family
Members of this uncommon, sporadically distributed protein family are large (>900 amino acids) and strictly associated, so far, with CRISPR-associated (Cas) gene clusters. Nearby Cas genes always include members of the RAMP superfamily and the six-gene CRISPR-associated RAMP module. Species in which it is found, so far, include three archaea (Methanosarcina mazei, M. barkeri and Methanobacterium thermoautotrophicum) and two bacteria (Thermodesulfovibrio yellowstonii DSM 11347 and Sulfurihydrogenibium azorense).
Statistics
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PSSM-Id: 274257
Aligned: 4 rows
Threshold Bit Score: 1093.78
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAB84832        2 SNIKNIRKRRKEVLLGEIGALLHDIGKLHPNFIGTNSIEKMPprff-------------------hanIDDFLKTELISA 62   Methanothermo...
AAM33052        3 ADLKVLADNKANLLLAEVAAWLHDMGKCSDKFVISSSCDKPSgfeykske----------dylsnfneNNNEIKSIFENT 72   Methanosarcin...
WP_012545561    3 SLLEKLKNNRTAILLAEIGAYLHLLGRFSKEFIYSNAEDADPncdnfdyqnicndnrffgnfslkdllQNDIWKTYLNKF 82   Thermodesulfo...
WP_012674005    2 SGLNRIKNNKDEILKAEIVSYLALWEKLNPSKQNRASINIQCn-------------------------NLSCWESALKNS 56   Sulfurihydrog...
AAB84832       63 LKAFEDLEINVEPIRIYNIISE---HHRNNVLQG-CDRKDSAD------DKGIVRR----KQSITDTVISSPFGYPkeki 128  Methanothermo...
AAM33052       73 FVDFSKVNFINEKVTLNDLIVKglpRTNKEKEKDkFPWLVRTLgrchgaAHIEKEDskefKQYKNYTMISNPFGFE---- 148  Methanosarcin...
WP_012545561   83 ISDKDLKDLKQNLTTFCDFIKK---HTWTQTPQGlCKILADAHgivsgiDKALAGRgkggKQRKRYTFKTSAFGYGekie 159  Thermodesulfo...
WP_012674005   57 KIDIRLEVNSKSFELWDNFLKDwrgWRKKNDLDFlLQILYGISeslnsgIDKGSPKedvkVKPEEKRWLANAFGSYkedi 136  Sulfurihydrog...
AAB84832      129 hlnclqKEFDDLQTILVRLFKYYISgvvnlslfR-RMLMKEAQVFFSHGLGETRIPSNDVTLWDHSYSTASRFKSILVAN 207  Methanothermo...
AAM33052      149 ------KGMEGLSSKLITIPYNKIN--------DrSFFVKSVVESFNYALGDTRRPTNEVTLTDWSGIVAALYKSALASA 214  Methanosarcin...
WP_012545561  160 l-lennKLKEEFFNALGEVLEKIKNglpdisyeDyRNFISLIMNYYSKTIGETRRPINEISLFDYAHMIASLLKSNLVKI 238  Thermodesulfo...
WP_012674005  137 iylresENIINGRIQNINNKVQSLLgnshiffeNlEELRKELKELLSGLLSDDRFPINDVSLWDQAYMTTSMFKALLSDY 216  Sulfurihydrog...
AAB84832      208 LCG-------ADIKDPELRIFGIFWNGIEFINKGRKIAEIKARKEIIERIKEKLKGKFEDEIPVGNSIYEDINGICFTFP 280  Methanothermo...
AAM33052      215 LLLki----kTDPTELKWRFLSIRFNSEQIWGNAQNIPILATRKKMLTEGLDRVKLLLEETYPLGNEIYRDEDNSIFVVP 290  Methanosarcin...
WP_012545561  239 IGCgw----yEPRGNSKWRVMRINIDVIGLISKGLKIGDISGYKNELDSVYDKLKKIIEYIYPLGNEIYRDSTGIYFSSP 314  Thermodesulfo...
WP_012674005  217 ILInqdftniPDRQEVRWRILGIQYNKLGLAEKGFKLASIEWYRQQTKEIDDSIKKLLEVEYPIGNEVYRDDTGIYFIVG 296  Sulfurihydrog...
AAB84832      281 E-FDRAEELANQCAKEALKIFLEESENELWPFFTLSKPSKTLTVLASELKFASSRRVYPKITPALFIDKKQKKIIADNPE 359  Methanothermo...
AAM33052      291 D-ISYLLDKTSEKNEPLKQLIANEFGFEGEVVITPEIGNEWWAQKPDRENEMQNDEIPPIAKILSNQRLYSPADPKDVAK 369  Methanosarcin...
WP_012545561  315 D-MDISEVIS--------KLREDLTCVDFELQISQSHSSRSLVSLASEREKSLSEIVFPHIS-------------KTKVS 372  Thermodesulfo...
WP_012674005  297 EnLGKNKDNNLAVLVDDLKPLEEEIINIFNEKLEGEVCPVIILTKASRGLMNLGDLLEKAKENFLYVKTDNKITQTLMQN 376  Sulfurihydrog...
AAB84832      360 MPIPQEGEDICPLCRLR-------AKPIEKERCEICSERIRG-RLANWSNKKE---NTIWIDEVADKNNRIALIALNFDL 428  Methanothermo...
AAM33052      370 FWEGTSNRGICTISWLRpqg--ptSKGFNRKASDCWVERVTW-RANEWYHSLD---STIWIDEVADSNDRICLLTGRFDL 443  Methanosarcin...
WP_012545561  373 ASMDHEGKDICPVCRIRl-------KEESKDRCIRCQERYEK-RARSWLDKNErskETIWIDEVADHNDRVALIFGQFDL 444  Thermodesulfo...
WP_012674005  377 VNNTSTAIGICPLCKVRliyeydkQKNNSPTICKTCDERIHHyQVKKWLEEISk--ETIWTSEIKDKNDRIALISLRLEL 454  Sulfurihydrog...
AAB84832      429 DKWFDgtmvgtiysqtykdwkhskkwekknvkknansvlngpieaikdh------------------------------- 477  Methanothermo...
AAM33052      444 LEWLK--------------------------------------------------------------------------- 448  Methanosarcin...
WP_012545561  445 RKWLSgeyldtfisqtfeswrnennsicsklsinkiedlekqf------------------------------------- 487  Thermodesulfo...
WP_012674005  455 KDWLNgnmlnsllgnmglgdftvekgkiiklilkgivdteiqeiinkiekeiciekfknlytvislkdsngnficrenln 534  Sulfurihydrog...
AAB84832      478 ---------------------------------------------------------------------vykilnyilen 488  Methanothermo...
AAM33052          --------------------------------------------------------------------------------      Methanosarcin...
WP_012545561  488 ----------------------------------------------------------------------------esmf 491  Thermodesulfo...
WP_012674005  535 tlqneirntsnraeygalisvvgfirdriygnqssnqdgyilkilenldeflkklkisqdlfqfvkqlqdsgfyslykti 614  Sulfurihydrog...
AAB84832      489 edsneekaaklldtffeeeiglrnkkdlkkefkNHLQNIRENIGADLNKEnla--------------------------- 541  Methanothermo...
AAM33052      449 ---------------------------------PDGYISTIKIRSEPNGK------------------------------ 465  Methanosarcin...
WP_012545561  492 fktindnqkelcksfigikpenftknfwepiaeRDATGQAMNLTNNPDKAkyl--------------------------- 544  Thermodesulfo...
WP_012674005  615 veklnelkakldskynstnssnfdkliqylrteKSSSSLTEKEIKEFKQEieniltqckpiqnfdidtliknslypfsin 694  Sulfurihydrog...
AAB84832      542 -----------------------------------------------------------------------tyLFTQNPS 550  Methanothermo...
AAM33052      466 -------------------------------------------------------------------------VITKTPS 472  Methanosarcin...
WP_012545561  545 ----------------------------------------------------------------------iklLFRKHPS 554  Thermodesulfo...
WP_012674005  695 eellnfyskynsvkeyfneiffgsiigtqwenwikqtplnakinwqdekiewdkftdendpaldilstlllqfLLRKNPS 774  Sulfurihydrog...
AAB84832      551 PARLYRIWKETEEFFD-LLINKITD----IYAYRWKRIGFSIDTHELKGRLKEEYKNIKELEKGSLIIKISGLDPETLLV 625  Methanothermo...
AAM33052      473 FARMNRIWRTTKKFWEdVENELGVK----IGQIDNRLKIIGKFQPENNSSLKMGHSYKAMLDRIGFSIFYGKEDEFLVIE 548  Methanosarcin...
WP_012545561  555 PARIRRIWNTTEDFIKnTLINNILS----KHSYGEASSHVNLRNKRIQLIISPSPN---IPIGSTIDIDIDGVRLSPVCV 627  Thermodesulfo...
WP_012674005  775 PARLRRIWETTQNFFEeIKREILDEnllgIPNWRRKRIVFELPYIQGIKDTGEELEGDGLLFWALPSENKDKTYIYLISS 854  Sulfurihydrog...
AAB84832      626 FHDRNGEFYTIESLGKFKFKnkVGEEAVKEALKQGIKHLAPEDEPEKNLIEVGKTIKTEDnlYFEKYYPLIEINR-SPLS 704  Methanothermo...
AAM33052      549 NHKELANKFGFDSEKYVDKN--PTRQLKEYLSTKKVKIYDSEGKNRSNPIGTLEILEMKE--EDTPYVPLIPILT-EPSI 623  Methanosarcin...
WP_012545561  628 DKSK-GIFITTTNLQILSIKgkTPEEISLWMKEKPIKVKKEGDVQWVGGYRITNVIPPNE--AFQDYYPYIPIYN-YPDQ 703  Thermodesulfo...
WP_012674005  855 IEDFIRKYANKDTLKRLNENn-LEDIDENNFEDFKIELKKYSEKENRETGSNLCSLQKSNikNFVLYNSYASITDpTPVG 933  Sulfurihydrog...
AAB84832      705 LRFIVPALDSVKIIEMIAELYNKRFEKVLGKLPLNLKLLVAKRKFPLYILLEAEKRMLKDEEFKKQTPMDPWWSVERLDE 784  Methanothermo...
AAM33052      624 FMAIIPAEKALDVSRLIKIKYETEMGKVRNRLPLSLGMVFAKSHTPLAALMDAGRKMLRKSNKEKSAKEDKWILEENPIK 703  Methanosarcin...
WP_012545561  704 FMLLIPAYDALNIAQKIFEQYEVQFSKVMDRLPFHLGIIAFHRRTPLYIAMDAAKRLIKAFNTKTKTIKAKVESIEDTPE 783  Thermodesulfo...
WP_012674005  934 WQVIIPTEYVPKFIDLIMEKYNKEFKYVYGKLPIHIGIIIQDYKKPLYIGLNALRKIRRDVKNIDKLYQNGTKFCMKYHQ 1013 Sulfurihydrog...
AAB84832      785 HYN----------------FYPIKPANGEKYTLDDLSRLSRGKIFYLYPG------YFDFELLS-----ATTDRYNICYE 837  Methanothermo...
AAM33052      704 NYNsftlk------fnngiKWKIPSIMGDEKTLDIWYPYFYVDGELRNRSdsfihsFKNPENSDrwlvhVSELKEGDIVG 777  Methanosarcin...
WP_012545561  784 NKHrkltitpdqdfssvplEWQISYSTGDPNQEDEWHPYIRIENKPSHTGg----yFFDYDGMGnyvvhVKGLKSNDCIK 859  Thermodesulfo...
WP_012674005 1014 KILnyakpee--lcnstqkYYSLYWDNKQKTNVDFYDFYIKPNENWKKTLs-----VMGNFVDDryieiIPNTFDFEFLD 1086 Sulfurihydrog...
AAB84832      838 GKK--------RGHEDHRLFSG-------------RPLYFHQIPQ-ILELWDLLSSNLSNSQINFIEKALTSKLREWKNV 895  Methanothermo...
AAM33052      778 ILPskfdfeflDSASRRFEICYdekgnrrgslkalRPYLLEELDN-FTDLWNICSKNLSNTQIRNIITLIEKKREEWDIG 856  Methanosarcin...
WP_012545561  860 IETsyfklvflESASDRFRIDD-------------NLRALDDIKR-IDDLWNDIQNLVRNRNIG-LAQVYAFWQETKKRY 924  Thermodesulfo...
WP_012674005 1087 TNTrrndifylKEKNYKRAFQLks----------nRPYEIEEYWDrFKRFRDTFKDKTNTAKLHKLVNIFYDKIENYNKD 1156 Sulfurihydrog...
AAB84832      896 KDAnkeNTFRIFAET--------TLKDAFGHKWDGLREENRFFLISSSINMLLLDTINLFTHVT 951  Methanothermobacter thermauto...
AAM33052      857 EDT---IVFENFVHD--------VLYNANWNNGKRPDDAKMTELEDAAKSGKLRDILELNLNIL 909  Methanosarcina mazei Go1
WP_012545561  925 EDYngdSIWKKFVSS--------SLINIF--KLSPTRDRDLFKKFFQATKDGLLDICIHWNLKV 978  Thermodesulfovibrio
WP_012674005 1157 INPllaSSIVNILELnknkdlqrDIAFIFGLDEKNDIYKELVNKLNSENIKLFLDMFEFWSKAL 1220 Sulfurihydrogenibium azorense
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