3M9W


Conserved Protein Domain Family
xylF
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TIGR02634: xylF 
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D-xylose ABC transporter, substrate-binding protein
Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Links
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Statistics
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PSSM-Id: 188237
Aligned: 7 rows
Threshold Bit Score: 473.952
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3M9W_A         5 IGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGI 84  Escherichia col...
P37387        28 IGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGI 107 Escherichia col...
P45047        28 IGLSIDDLRLERWQKDRDIFVNKAESMGAKVFVQSANGDDSAQISQIENMINKNIDVLVIIPHNGEVLSNVISEAKKEGI 107 Haemophilus inf...
CAG18893      27 IGMAIDDLRLERWQKDRSIFVDRAESLGAKVYVQSANGNEQTQISQIENMISRGVDVLVIIPYNGEVLSNVISEAKRDGI 106 Photobacterium ...
AAO56495      29 IGFSIDDLRLERWSRDRDYFVAAAEKLDAKVFVQSADANEQKQISQIENLISRGVDVIVIVPFNATVLTNAIAEAKKAGI 108 Pseudomonas syr...
WP_013065765  25 VGVSWSNFQEERWKTDEAAIKAALEAAGAKYVSADAQSSSAKQLSDIESLMAQGVNALIVLAQDTEAIGPAVQAAADEGI 104 Rhodobacter cap...
AAV94166      27 VGVSWSNFQEERWKTDEAAIKAELESKGAKYISADAQSSSAKQLSDVESLIAQGATALIILAQDAQAIGPAVQAAADEGI 106 Ruegeria pomero...

3M9W_A        85 KVLAYDRMINDAdIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQ 164 Escherichia col...
P37387       108 KVLAYDRMINDAdIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQ 187 Escherichia col...
P45047       108 KVLAYDRLINNAdLDFYVSFDNEKVGELQAKSIVAVKPEGNYFLMGGSPVDNNAKLFRKGQMKVLDPLIASGKIKVVGDQ 187 Haemophilus inf...
CAG18893     107 KVLAYDRLISNAdIDFYLSFDNEKVGEMQAQAMLKAKPEGNYFLMGGAPTDNNAKLFRQGQMNVLQPKIDSGDVKIIGDQ 186 Photobacterium ...
AAO56495     109 KVVSYDRLILNAdIDAYISFDNEKVGEMQASGVLQAAPKGNYFLLGGAPTDNNAKILREGQMKVLQPAIDKGDIKIVGQQ 188 Pseudomonas syr...
WP_013065765 105 PVIAYDRLIEDP-RAFYLTFDNAEVGRMQARAVLAAAPKGNYVMIKGSPTDPNADFLRGGQQEVLQAAIDAGDIKIVGEA 183 Rhodobacter cap...
AAV94166     107 PVVGYDRLIEDS-RAFYLTFDNVEVGRMQARAVLEAAPSGRYVMIKGSPTDPNADFLRGGQQEVLQAAIDKGDITIVGEA 185 Ruegeria pomero...

3M9W_A       165 WVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGkVAISGQDADLAGIKRIAAGTQTMTVYKPI 244 Escherichia col...
P37387       188 WVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLSGkVAISGQDADLAGIKRIAAGTQTMTVYKPI 267 Escherichia col...
P45047       188 WVDSWLAEKALQIMENALTANKNNVDAVVASNDATAGGAIQALSAQGLSGkVAISGQDADLAAIKRIVNGSQTMTVYKPI 267 Haemophilus inf...
CAG18893     187 WVDSWLAENALKIMENALTANDNNIDVVVASNDATAGGAIQALEAQGLAGnVAISGQDADLAAIRRIVDGTQTMTVYKPI 266 Photobacterium ...
AAO56495     189 WVKEWNPTEALSIVENALTRNDNKIDGIVASNDATAGGAIQALAAQKLAGkVPISGQDADLAAVKRVIDGTQTMTVYKPL 268 Pseudomonas syr...
WP_013065765 184 YTDGWLPANAQRNMEQILTANDNKVDAVVASNDGTAGGAVAALSAQGLV--VPVSGQDGDHAALNRVALGTQTVSVWKDA 261 Rhodobacter cap...
AAV94166     186 YTDGWLPANAQRNMEQILTATDNGVDAVVASNDGTAGGVVAALTAQGMEG-LPVSGQDGDHAALNRVAKGTQTVSVWKDA 264 Ruegeria pomero...

3M9W_A       245 TLLANTAAEIAVELGNGQEP----KADTTLNNGLKDVPSRLLTPIDVNKNNIKdTVIKDGFHKESEL 307 Escherichia coli str. K-12 s...
P37387       268 TLLANTAAEIAVELGNGQEP----KADTTLNNGLKDVPSRLLTPIDVNKNNIKdTVIKDGFHKESEL 330 Escherichia coli K-12
P45047       268 TKLADKAAEIAVELGKNEKI----EANAELNNGLKNVPAYLLDPIAVDKRNINeTVIKDGFHTKESI 330 Haemophilus influenzae Rd KW20
CAG18893     267 SKLAAKAADIAVELGNSEIP----SSNTTLNNGTKDVPAWLLEPITVSKVNIKqTIVADNFHTEKDI 329 Photobacterium profundum SS9
AAO56495     269 KLIATEAARLSVQLVRNEKP----AFTSQYDNGSKKVDTILLTPTPLTKDNID-LLEKDGFYTKAQM 330 Pseudomonas syringae pv. tom...
WP_013065765 262 RELGKNAAEIAVALAGGADMksvaGATEWTSPAGTKMTAKFLTPMPITKDNLS-VVVDAGWIPKETL 327 Rhodobacter capsulatus
AAV94166     265 RDLGRAAARIAVSLAEGTQMnaigGADDWTSPGGTKMNAMFLEPLPITKDNLS-VVVDAGWITQETL 330 Ruegeria pomeroyi DSS-3
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