Conserved Protein Domain Family
delta_60_rpt

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TIGR02608: delta_60_rpt 
delta-60 repeat domain
This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Statistics
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PSSM-Id: 274229
Aligned: 34 rows
Threshold Bit Score: 44.9227
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAF76874     352 DIAKAIVLQPDGKIIAAGYTDDllvgF--PSTDLALARYNVDGSLDTSFNADGKATIDLG 409 uncultured soil microbe SL1-36C7
CAE78065     239 NDVYDLKTDSLGRIIVSGYtw----pT--GDLSGVIARLSSDGSLDTAFGGTGIVITNRS 292 Bdellovibrio bacteriovorus HD100
CAE78065     297 DSIYSIHPLSDGSILVAGAlt----tA--GNSNCYLSKYTAAGAVDATFNGTGISVVDFG 350 Bdellovibrio bacteriovorus HD100
CAE78065     353 DVCRGMDVMSDGSIMMSGn-------S--AN-NFVAAKLTAAGALDASYGASGLVSVDVT 402 Bdellovibrio bacteriovorus HD100
AAR36087     147 DRGKGVVVQPDGKLLVVGTVEQa-----aGNTDIVLWRLTAQGEPDTGFGVQGSVVIDAG 201 Geobacter sulfurreducens PCA
CAE78065     738 EDFHDLGVQSDGRILLVG-GAVh-----gALYKAIVLRLNTDGSIDSSFGTAG-VVLEQP 790 Bdellovibrio bacteriovorus HD100
CAE78065     123 DNLMDITTQPDGKILGVG-LSNe-----gSTSSIALVRLNSDGTPDVGFGTVGFSYLNLP 176 Bdellovibrio bacteriovorus HD100
WP_011555000 409 DRFWSVAFDSTNRIYAAGFVTEg---GdnGDNQMVVARFTTEGNLDTTFGTGGIAKINVA 465 Myxococcus xanthus
WP_011555000 236 AEAYAAGMQSNGSYVTTGYGRSa--sS--GKVDLVSFRYTSTGALDPTWGTGGAVVLDLv 291 Myxococcus xanthus
WP_011556157 330 ATLHAVTVDSRGRIVGAGTVQ-----H--DDLDFVIMRLTPTGAADTTFSSDGLAWDDLG 382 Myxococcus xanthus
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