Conserved Protein Domain Family
cas_Csh2

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TIGR02590: cas_Csh2 
CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI
This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.
Statistics
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PSSM-Id: 274217
Aligned: 3 rows
Threshold Bit Score: 407.396
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
vng:pNG4049   11 RSEIVFLYDAVDANPNGNPLSsANRPRIDPQTQQAIVTDVRLKRYLRDQLDDDGHGVYIRNVQEEgeqytradllEDRLK 90  Haloarcula mari...
AAM30259       4 TREYLLVWDSTMANPNGDMLN-DNKPRHDEITGQLEVSDVRIKRFVRDEWQSRGHNVLVRTKKGD----------DGKVM 72  Methanosarcina ...
WP_004082348   7 RSEVLFIYDVKWANPNGDPLD-ENRPRFDEETSRLFVTDVRLKRTVRDYLAECYDETLWVTG------------------ 67  Thermotoga
vng:pNG4049   91 SVDYDSYDLDDDEEAEQFREDvfGEYLRKSADVRYFGATMSVDTddvyakhlpDHFTGPVQFSPGKTMHAVNENEEYDsl 170 Haloarcula mari...
AAM30259      73 SCTALIKEVMEKAKVKEAELP--SHLLNEYIDVRLFGAVITKPK---------YDITGPLQVMWSKSVNPAEIKFMQG-- 139 Methanosarcina ...
WP_004082348  68 ------EAVVPEDRVKELGIKdvNDACQKCIDIRLFGAVIPQSKkga----meSSITGPVQFRYGTSLHRVKLMTIQG-- 135 Thermotoga
vng:pNG4049  171 TSVIATQEGKEQGGFDlDDHRIQYGLIRFHGLVDEHGAADTRLT--QEDVERLDTLCWRAIKNqTISRSKVGqEPRLYCR 248 Haloarcula mari...
AAM30259     140 NSAYAGGEGKSQSTIW-SKYISPYAIFKTYAVYNDNAAKRQGIEtsEKDLNEFTAALINGLIN-YRSTSKNQ-MPRLLVE 216 Methanosarcina ...
WP_004082348 136 TAAFATENSK-QRSFR-EDQVVPYALIAFYGVINQNSAKFTGLT--EEDVSKLLEGIWMGTKN-LITRSKMEhNPRLLMR 210 Thermotoga
vng:pNG4049  249 VEYADESf-HLGGLDKdLRLDEEAskDDEDLRNVRDLAVEIDDFVDRLDGAGAQVERIRVVASDVLQFTH 317 Haloarcula marismortui AT...
AAM30259     217 VIYKEHR--IDGELNY-VDVNFDT--EAEEVRDISQVTLDLEKLCKYYDCKKESIDTVRIYKHGSVKVNN 281 Methanosarcina mazei Go1
WP_004082348 211 VVYKEGVnyHSGELDYlVKVVSEK--EDEEIRDISELKLDVTELKQVLESLKDKIERIEYSVDNRLKLAE 278 Thermotoga
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