Conserved Protein Domain Family
cas_TM1811_Csm1

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TIGR02578: cas_TM1811_Csm1 
CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE
The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.
Statistics
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PSSM-Id: 274209
Aligned: 9 rows
Threshold Bit Score: 603.624
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q59066        10 LKIGALLHDIGKFIQRASDKPKS-KGHDKFGYEFLKEKFKNGFLNHLDEKTKDKILEIVKEHHNQKI------------- 75  Methanocaldococ...
CAD84034      10 VAFAALLHDLGKFHERTGQPVNGdLAALTTLYRYSHAAHTGGMWDVVEKYAPDLLRGDVAPFSGRTSgaditdsmanaaa 89  Nitrosomonas eu...
AAS82432       8 VALAGLLHDVGKLYSRARWGERDdRVPDRTHTAYTAHFFREHAGLFRGAGLDPDWLARTASRHHEGWr------------ 75  Thermus thermop...
BAB59253       8 LITASILHDIGKIQQR----YKLsEKHADLGYQFIKEIKYSN-------KDMERIANLVKHHHHDPD------------- 63  Thermoplasma vo...
AAL62566      12 YVVAALLHDVGKLIRRAKLCAGEpAKRHVEHSVEFVDFISNALCRAG--LNVDLVKRLVEGHHEGDYgi----------- 78  Pyrobaculum aer...
WP_002486045   7 LMYGSLLHDIGKIIYRSGDHTFSrGTHSKLGHQFLSQFSEFKDNEVLDNVAYHHYKELAKANLDNDN------------- 73  Staphylococcus ...
WP_012547990   6 ILLSALFHDLGKVLERTKEYYTKeLPERFAKVEYVHPKFSAFLLETLG-KEKSELSNFLKEHLTEEV------------- 71  Dictyoglomus th...
WP_012545181   8 VAKGGLLYNIGRVALRAEGNFNE-ENFVEKGREWIEKHLKN----------DDSALKIAKSLQEKDE------------- 63  Thermodesulfovi...
WP_004082358   7 LVVGALLHDIGKVVRRAGDd----RRHQIAGYDFTNKVKKFA--VIQDYIHYHHEKDLLKKSLENEK------------- 67  Thermotoga mari...
Q59066        76 --------KDDLIGIVRLADWLSSGERREPKGDPENVEVLN--T--EEQKLLSIFETVCIGELTENLYKNGFKYSLKPL- 142 Methanocaldococ...
CAD84034      90 ahhkpgtlLQWIIATADRAASGFERTKFDEYNADAEGETPQhkN--RFQARMISLFEQIKINAQAPVGQFKHAYPLRALg 167 Nitrosomonas eu...
AAS82432      76 ---------DRPQYRPETPEEWCVALADTYASKEREEGEGGgsP--PEVPLSPPFRRLLLGGEEGREGGYSPVGAGGRVg 144 Thermus thermop...
BAB59253      64 --------KTELDGRDKKLLKILQIADRKSAAHDREDRDLG-------EYRDIKLHKISNEIQIKDMKDTNCTYELKTLd 128 Thermoplasma vo...
AAL62566      79 -------aPYDRAAALERLRGDEESGGRLAIPDRGEHQIPLvlY--EDEKTALYVPPCPLPQSLREAEGFKPSRDISSIt 149 Pyrobaculum aer...
WP_002486045  74 --------TAYITYIADNIASGIDRRDIIEEGDEEYEKQLF--NfdKYTPLYSVFNIVNSEKLKQ---TNGKFKFSNES- 139 Staphylococcus ...
WP_012547990  72 --------IDLVLFHHSPQNDYGQIIQIADWLASSEREENQ--S--QKEHYVNVVLSGPFKKVDENA--KDIKYPLTTL- 136 Dictyoglomus th...
WP_012545181  64 --------LFFLWKEAHSLACKNEDIKYFT-----------------PNPIISPFYKIRNPNNLNETLNKIPYYQLQSE- 117 Thermodesulfovi...
WP_004082358  68 --------VWYVCFADN-----LSSKERMTEDQKFE----------ELRRMVNLLSKIPEGESSRNV----TYFPAKPA- 119 Thermotoga mari...
Q59066       143 -------NVSDAIFTDKPYPNENYKELFSKFEDEIKDFKG--DVSFEELYQLMQKYTWCIPsvtmwkkAGSLKGGLPDVS 213 Methanocaldococ...
CAD84034     168 peaifpdKRAVIEPNENKTAQAEYAALWEQFLQALESIPKshRSNWPLWLDHFDSAWLTFTqa---ipSATNRGVVPDVS 244 Nitrosomonas eu...
AAS82432     145 l-----eAGGLYPEERPNVSKDVYKRLLERLEGRLEEMARfsLGKEALVLNLALALQETLSl------VPSDTQSEPDVS 213 Thermus thermop...
BAB59253     129 -------------DQENKAANSGYKYLYNKVKADIDKLNFnePDKYKFFNTLNSILYKDTVai-----pSAFYYSKPDIP 190 Thermoplasma vo...
AAL62566     150 ------------PERVCQCYQQSYRELMR-LAGELRQLEMsySQLVETLVYILKATASFVP-------AAVYGVDKPDTS 209 Pyrobaculum aer...
WP_002486045 140 -------NIEYPKTENIQYSSGNYTTLMKDMSHDLEHKLSikEGTFPSLLQWTESLWQYVP-------SSTNKNQLIDIS 205 Staphylococcus ...
WP_012547990 137 -------ENIFPSSGDVKASDESYKRLVNSLLKLFPKV-----DNIDQLLTLFEFYLSQVP--------AQTTGYEPDIS 196 Dictyoglomus th...
WP_012545181 118 -------KPQIAIYNKPIINHENYRRLIEKFKKDLQSTKP--PYGINLLTMLMEKHLSNIP----------LGSPFDDVS 178 Thermodesulfovi...
WP_004082358 120 -------NEVVEAVKDMKEDQKTYEDLYRRFVEDAQKISPtpDD----VNFLTYKYFSFIP-------QETRVEGDMDIS 181 Thermotoga mari...
Q59066       214 LFDHSKTTCAIACCLYQMYVKEnkkknkyakeYIDDKTLEKLFNN-DNGWNKEIFSLIHGDLSGIQDFVFT-----ITTK 287 Methanocaldococ...
CAD84034     245 LYDHSKAVAALAAALWRWHEETg---------NTGADALAKLSDSeRPDWDEQKLLLIQGDFFGIQNFIFAqg--aQTQK 313 Nitrosomonas eu...
AAS82432     214 LYDHLRLTAAIAHALWLFHGGS--------------------PSAqDLRQDGEKFLLVVGDMGGIQGHIYRiagaeAGVG 273 Thermus thermop...
BAB59253     191 LYHHLKLTAAIALSLYRNLKSS--------------------DIEiSDDDKNPFFILLMCNLSGIQDYIFRhykseAADE 250 Thermoplasma vo...
AAL62566     210 LFAHLILAAALAS-------------------------------------TGGEFFLVSIDVGRIQEYISRa----RTTA 248 Pyrobaculum aer...
WP_002486045 206 LYDHSRITCAIASCIFDYLNENni-------hNYKDELFSKYENT-KSFYQKEAFLLLSMDMSGIQDFIYN-----ISGS 272 Staphylococcus ...
WP_012547990 197 IYDHSRITAGLAHALYKDYKNNllnkndlnkiKDLLRDRKKIDTAgEEIFNRKLFTFIVGDISGIQSFLFN-----VSSE 271 Dictyoglomus th...
WP_012545181 179 MFRHCVLVSAISGCLYLYLKEK------------RRDKDFSVASIvDCLSSEKPFLLVGGDLSGIQKFIYT-----ITSK 241 Thermodesulfovi...
WP_004082358 182 LYDHLKVTAMLALSLYDYAKEN----------DLKFESYQEMKSH-FENSNVKPFLLVGGDVSGIQNFIAN-----VSSK 245 Thermotoga mari...
Q59066       288 YATKSLKGRSFYLDFLTEYFAKYICKELN-------LPITNILFYGGGHFYILSYKVDEN--L--INKLEKEINEVLFNM 356 Methanocaldococ...
CAD84034     314 HAHKLLRGRSFQVALLAEMAALKLLETLQ-------LPSTSQIINAAGKFLIVAPNTPSA--ReaVETCRRSFDQWCLQH 384 Nitrosomonas eu...
AAS82432     274 GIAKRLRARSLEVSLAAEAMALGLLWRLG-------LTPLNRILGAGGKFYLLLPNTEEA--RaaLEGTREAWGRWALKR 344 Thermus thermop...
BAB59253     251 KGTKRLKGRSFMIKLFTDSIESYIINEFN-------LYRFNVVWEKSDGFLLLMDNNEEN--IkkLEDIKKNIDLGLIEK 321 Thermoplasma vo...
AAL62566     249 RAMSILRGRSLRITLLQKLAARRLIEEINkalggdvVTHANILIDTGGEVLLIVPKVEG------IEKIVERIEEEVLKE 322 Pyrobaculum aer...
WP_002486045 273 KALKSLRSRSFYLELMLEVIVDQLLERLE-------LARANLLYTGGGHAYLLVSNTDK------VKKKITQFNNELKKW 339 Staphylococcus ...
WP_012547990 272 RAGRMLKGKSVFIDLLSRYSAKFILDSTG-------FTRVNTLYLGGGNFELLLSYIPED--E--LTRLRNHIIETLWKF 340 Dictyoglomus th...
WP_012545181 242 GALRALKGRSFYIELLIEHIVNEIIDNLN-------LTRCNIVFSAGGNFCIVSPNTDNAvsE--LDKLKSRIETFLFNE 312 Thermodesulfovi...
WP_004082358 246 GALRSYRGRSFFIEILQEVVVDEILDKTG-------FYRTNVHFIGGGHFYLVLSNTEK------VKKALEEIRNELNEW 312 Thermotoga mari...
Q59066       357 FRTkiyitiaevgvtPNDFKKSEDKESKEKTWG--FAKKWKEVSEKTVEKKLRRFEYKLEGLFEP-----YNRGSENRCV 429 Methanocaldococ...
CAD84034     385 TYG------------EISVGIASTSASCNDLRSdrFRTLTQKLFGALDVAKHRRFDLCGNTAAVR-----DVSFADGPCD 447 Nitrosomonas eu...
AAS82432     345 GGS-------------LVPHLAWVAFRGQDFRD--FAALLKRLHEALAREKLRPFAFLASTGGVLg-------APLRPCA 402 Thermus thermop...
BAB59253     322 KRGitaniawvtaslDDFTTLAVNRNLELEGENdnFKVKMQCLYNNIDKAKRMKMSEIFSDNAIErd-vkFGHSITNMCE 400 Thermoplasma vo...
AAL62566     323 TEG------------MLTLYIHYSGPHRLDDIKdfYEIMRRHTHGVVERKVKFRLYPAPASAGNAkskfgAYSFYNDTCD 390 Pyrobaculum aer...
WP_002486045 340 FMSefttd----lslsMAFEKCSGDDLMNTSGN--YRTIWRNVSSKLSDIKAHKYSAEDILKLNH-----FHSYGDRECK 408 Staphylococcus ...
WP_012547990 341 VGDd------------LYLGIEWDYLSINDLLN--FINKREEVMLKANQRKKKRYSTLENFYDLIfvpksEDIKEGEYCT 406 Dictyoglomus th...
WP_012545181 313 FKGe------------LQLHLEYIAFGEESFKN--SASVSDGLGEKLEKSKKTGWQKRLKDILKPes--pHENCLTTQCD 376 Thermodesulfovi...
WP_004082358 313 FRNrg---------lsLHLVIESVEFSVKDVED--MSKVFKKIGEKLNERKYRMYTEKDLEAIFPddlnlIQEKGNHTCK 381 Thermotoga mari...
Q59066       430 ICRNefdknekgyAIRENESKSERICDYCASFVALTDILKnfqMEKTIKFNKAYPII---H-------LTKNKDNLSLQR 499 Methanocaldococ...
CAD84034     448 YHGRy-------pADCAAEGDKSASCALSRDQIVIGEALTk--HARLLVLNTADSFK---Kpl----dLDYFGYRLIFVN 511 Nitrosomonas eu...
AAS82432     403 ACG----------LEPARRDEPGSLCPDCEREAALGARLPr--SDRVGFFLEEAPRP---Y-------LDFPGLKVGLGG 460 Thermus thermop...
BAB59253     401 SCG-------------MDSIYDNAKCIGCLEEENIGSSLY----KYSNIITDIDNSY---N-------ADNRKNIILFHY 453 Thermoplasma vo...
AAL62566     391 FCGRp--------AATRAVEEDLNLCDLCAEEYFVGKAARnlqAVLITRGLDVAGDR---VggcrldrMDMLGYTVLFAG 459 Pyrobaculum aer...
WP_002486045 409 EC-----------LRSDIDINDDGLCSICEGIINISNDLR----DKSFFVLSETGKL---K-------MPFNKFISVIDY 463 Staphylococcus ...
WP_012547990 407 ICGK---------KKVEDASSQDRWCKTCKSFVELTGKLR----DASFLIEERVNIP---S-------KDPETWDEFFEK 463 Dictyoglomus th...
WP_012545181 377 VCFRedv----slVSLQRGDEALQVCEPCYFQYKLGEELLeisEGISPVIYRLSEQPqgdY-------VKIEKFYYCFRR 445 Thermodesulfovi...
WP_004082358 382 ICGNrv-----dkLFSIREGEEEIACDFCKEMYELGRELL----EESHVYLAERKNG---K-------FEIFKRKFDFSR 442 Thermotoga mari...
Q59066       500 EEFSFLtvkaieklesKFRVLSDENYFLKEYKLPHDS---------GELIIPYKIWAIAFPIIENETEKRILDFDGL-A- 568 Methanocaldococ...
CAD84034     512 EADASG----------HYGKLAEQGELVRAWDFDLPDkngtcfhgyARRFVNSYVPIWDENEKKDDPAYKRLSQEDL-G- 579 Nitrosomonas eu...
AAS82432     461 PLEGAFhlfrarldfaPWPDPSEAKPLLGHLPRVEHAlkakgwsleAYRAWAEEEGLLEDEEPHPEKVLTFAELAAL-S- 538 Thermus thermop...
BAB59253     454 GNKYIKyy--------fsDHEEKEVIKIYDYNNIDSN----------YNNWRFILQAKYVPLYDDVRSIKPFSDYFK-D- 513 Thermoplasma vo...
AAL62566     460 GACDAK----------ALAQVGQGGSLYVVNSRDFIG---------RASGVAYGFIFTNQHIPQAEWAERPVALSLE-E- 518 Pyrobaculum aer...
WP_002486045 464 EEA---------------EMLVQNNNQVRIYSKNKPY---------IGIGISTNLWMCDY---DYASQNQDMREKGI-Gs 515 Staphylococcus ...
WP_012547990 464 LGYCIDfv-------nNFSRLGQTSKKIYQLEDVHIK---------DGFIPDGFLLGSFK---IIESNFEEIAERNIvG- 523 Dictyoglomus th...
WP_012545181 446 SRDE------------KLENLADKIYRINNFNAENYN---------KPNNIFLPLGIYKKR--GLKELTDAVSDFGI-N- 500 Thermodesulfovi...
WP_004082358 443 EPG---------------EGFSYKLRRIYEFSEKEKN---------VRR-----IQVVTY---FKEQEFEKIAEKAP-G- 488 Thermotoga mari...
Q59066       569 ----EKafe-----------rtGTRKIGILKMDVDNLGEIFTTGLGNDAt-----ISRMSTLSSMLTLFFTGYIPHLIKN 628 Methanocaldococ...
CAD84034     580 ----DTspgklktlhsiaagsnNEIALVTLKGDIDNLGALFQSGLAEPT------FARWASLSRQVNAFFALWLPWYCAH 649 Nitrosomonas eu...
AAS82432     539 ----EG-----------------APYLGALMLDADRMGEAFATGFRREGrdl-atPSRLAALSRTLEVFFTTEVLTLLEE 596 Thermus thermop...
BAB59253     514 ----ES----------------EHKMLGVLKADVDDMGLIVAAGLKRTT------ISKLASLTFEFEYFFSVKLDEIAQQ 567 Thermoplasma vo...
AAL62566     519 ----LEg------------------IAVFVKLDANAMGRRKFEASKRPS--------LLVTFSTSVSMAYELYSALLAGD 568 Pyrobaculum aer...
WP_002486045 516 yvdrEE----------------GVKRLGVVRADIDNLGATFISGIPEKYn----sISRTATLSRQLSLFFKYELNHLLEN 575 Staphylococcus ...
WP_012547990 524 ----DY----------------GDKKLAYLKMDADNMGEIFKKLGDKEKkreglaLTRYGILSRRMELFFGKGVLDLIKD 583 Dictyoglomus th...
WP_012545181 501 -------------------------RLAVLRMDVDNLGKIFGSAIAEQEr----tFARISEISNRLNQFFKYHLNYIAEG 551 Thermodesulfovi...
WP_004082358 489 ------------------------KKIASLLVDVDNLGKIFLKGLKKKT------LSRYSTLSRLMSFFFKERVESIVEG 538 Thermotoga mari...
Q59066       629 -------------EEFevngk---------kykfKDNIYLVYAGGDDTLIVGAWDAVWELAKRIRGDFKKFVCYnPYITL 686 Methanocaldococ...
CAD84034     650 -------------GENr----------------rFRNTYTVFAGGDDFFLIGPWESTLELAGAMRKAFARYVVR-DDITF 699 Nitrosomonas eu...
AAS82432     597 -------------PRRyrerlgwddleaqgkearYPLLYSVYSGGDDLFLLGPWDALLDFALDLERLYRLFTRH-PRLTL 662 Thermus thermop...
BAB59253     568 -------------N---------------------KDIYIVYSGGDDVTAVGEINKLIKFISDFHNEFNKYFCK--KINI 611 Thermoplasma vo...
AAL62566     569 -------------Er------------------fRESVYVVFSGGDDAILAG-DVAALSYASRLAEYAESWGFR-----T 611 Pyrobaculum aer...
WP_002486045 576 -------------Y----------------------QITAIYSGGDDLFLIGAWDDIIEASIYINDKFKEFTL--DKLTL 618 Staphylococcus ...
WP_012547990 584 -------------KRE------------------KGYLYPVFVGGDDLFIIGTYNEINNLVREIREKYSEYTGSqEIFTI 632 Dictyoglomus th...
WP_012545181 552 keidsldiaergvKNK------------------GRNLMIIYSGGDDVFILGHWLDVIETAFDIRRYFELFTGN-RFLTI 612 Thermodesulfovi...
WP_004082358 539 -------------K----------------------NVMVIYSGGDDLYLVGGWNDVLDVAKELREAFGRFTTN-DFMTF 582 Thermotoga mari...
Q59066       687 SAGIVFVNPKFEFKKAVNMAEEELENGKN 715 Methanocaldococcus jannaschii DSM 2661
CAD84034     700 SLGAVMTQPKIPARQLAVAAESGLNAAKQ 728 Nitrosomonas europaea ATCC 19718
AAS82432     663 SGGFLLVPPSLPVPELARLLGEAEKRAKA 691 Thermus thermophilus HB27
BAB59253     612 SAGVTVVSPKFPLRRAVLIAEENLKKAKE 640 Thermoplasma volcanium GSS1
AAL62566     612 AIGVKVESDHYPVYYAFINTEERLEEAKE 640 Pyrobaculum aerophilum str. IM2
WP_002486045 619 SAGVGMFSGKYPVSKMAFETGRLEEAAKT 647 Staphylococcus epidermidis
WP_012547990 633 STGMGYFPDNFPLIRGARIVEEFLEKAKN 661 Dictyoglomus thermophilum
WP_012545181 613 SGGIAINQDSYPVYQYARDAEELERLAKR 641 Thermodesulfovibrio yellowstonii
WP_004082358 583 SAGYVITDEKTSMSLIREMSERAESAAKK 611 Thermotoga maritima
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