Conserved Protein Domain Family
cas_Csy3

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TIGR02566: cas_Csy3 
CRISPR type I-F/YPEST-associated protein Csy3
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.
Statistics
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PSSM-Id: 274205
Aligned: 6 rows
Threshold Bit Score: 497.03
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
lhbprmlnih:CBU_0159  21 DIASVLSFEKKLIPSDGYMFGTSWDKKSE---VTPLKLREKAVRGTISNRFNkndskTFLDDPMKLDADVER---PNLQR 94  Coxiella...
AAQ59426              5 ENPSVLAFERKLDPSDALFYAGNWDARDAsqtWPHIAIQEKSVRGTISNRLK-----TKDQDPAKLDAAIES---PNLQT 76  Chromoba...
AAK02391              5 STPSVLAFERNLDISDAIFAQK--DSKNDkdaPVPLRIREKSVRGTISNRLKn----TITNDPAKLDAETEK---ANLQR 75  Pasteure...
CAG69250              6 KLPGSLSLQRGTVVSDGAFFNLFEDGKQE-----PLHVMYHGIRGTQNVAGNkekgaATGNSLAREVTNIQLtesAKLQP 80  Acinetob...
BAC62732              2 KLPNGLSYMKSIEASDVIFLVNWPDGRKT-----PLPYTSRVALGMKEGSKSaykydGQIDADVTAYSLAQG----NPHE 72  Vibrio p...
WP_002211867          7 KTASVLAFERKLSNSDAMMYAGNWGQTDN---WQPIIIKEKAVRGTISNRLKn----ALASDPAKLDAEIQK---ANLQR 76  Yersinia
lhbprmlnih:CBU_0159  95 VDACALDQNQDTLKLCFTLKVLGGITNPSACNNALFKQSYKAAAKIYIDTHGFTELATRYAENLANARFLWRNRFGAERI 174 Coxiella...
AAQ59426             77 VDVAALPHDADTLKASFTLRVLAGAGAPSACNSAAYRAKLLVTVSAYARDIGFGELARRYAHNLANGRFLWRNRVGAEQV 156 Chromoba...
AAK02391             76 VDVATLDDDKDTLVATFSIKVLPFTGRPNVCNDQDYQHQVMTTVAQYLSEQGMDELAKRYATNIANARWLWRNRMGAEKI 155 Pasteure...
CAG69250             81 NAKLLVKWDFRFIDLSYVLFASASKAGADKTEEYNFRQAFLNFVNRAKESDGLKEVVRRYVRNIVNGRWLWRNRIVAESI 160 Acinetob...
BAC62732             73 IDFCCVPYGAESIECEFSVSFASSLRKPFKCSDPEVKRTLVQLIKLYEEKVGWEELANRFLENICNGRWLWRNNECTYST 152 Vibrio p...
WP_002211867         77 VDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDI 156 Yersinia
lhbprmlnih:CBU_0159 175 EVRVN-ASNKTVSQKWAFDATKFNLHTFD---SSDTSVKELGALIANALSSEDdYLLLDVNCYVQVGSS-QEVYPSEELV 249 Coxiella...
AAQ59426            157 EVRIQrLADGQEQAGWTFDAQALRLRDFAasgQAASDLDAVAKLIAAGLNGEQ-HVLLRVTAFVRIGAG-QEVFPSQELI 234 Chromoba...
AAK02391            156 KIEVT----CGENTIHFDDAKQFSLNHFD---HQDDKIHQIAKEIKQGLLGEK-FVILYVTAYANMGYG-QEVYPSQELV 226 Pasteure...
CAG69250            161 TIQVT---AQDYPETFSFDALSYNLKSFA---EPSEQEQKLAGILLKGITGEStNAALHIEAIVDFGMGgVEVFPSQNYL 234 Acinetob...
BAC62732            153 SIGIKpWPWEDEKAISPFHDIRKNYAGTNh-fRDHKDWDNLIKLITDAFSQPNgLCIFEVSATFRLGTN-APIYPSQVFK 230 Vibrio p...
WP_002211867        157 KVCIT-----SQTKSYQFDSNEFSLRQFS---QPSKELTALAQEIEQGLAGNG-FAFFTVDAFVRLGNG-QEVFPSQELV 226 Yersinia
lhbprmlnih:CBU_0159 250 LDKSSsd-----kkGKKTKILYAVND----IAAMHSQKIGNAIRTIDTWYPDFTNQeqtaGPIAIEPYGAVTNLGRSYRT 320 Coxiella...
AAQ59426            235 LDRQR---------GDKSKTLYAVKQkdgdIAAIHSQKIGNAIRTIDTWYPEADDN----GPIAIEPYGSVTTQGKAYRQ 301 Chromoba...
AAK02391            227 LDNSTn--------NRKSKILYEINQk----AGMHSQKVGNAIRTIDTWYAEEVAF-----PIAAEPYGAVTTLGTAFRQ 289 Pasteure...
CAG69250            235 EDKPKgfsrslyqlTPKKPDHKANDNqylgQAALRDQKIGNALRTIDTWYPSFKENd--eKPIAIEPNGANLEGQIFYRV 312 Acinetob...
BAC62732            231 DSVK----------GEKNRIYQSTDVdgesSPILGCYKTGAAIATIDDWYPDADKP------IRISHYGAHREDVYCYRH 294 Vibrio p...
WP_002211867        227 LDSN----------SKKSKVLYQIDG----IAALHSQKVGNALRTIDDWYPDATELa--lGPIAVEPYGSVTSRGKAYRQ 290 Yersinia
lhbprmlnih:CBU_0159 321 PKDKQ-DFYTFFDAWARGEQLARVEDE--------HYVMAVLVRGGVFGKSD 363 Coxiella burnetii RSA 493
AAQ59426            302 PKQKQ-DFYNLLDNWVLKDEAPPLEQQ--------HFVIATLIRGGVFGEAG 344 Chromobacterium violaceum ATCC 12472
AAK02391            290 PKTKKnDFYTLFDNWLLKGEVPPVEQQ--------HYVMSVLIRGGVFGASG 333 Pasteurella multocida subsp. multoci...
CAG69250            313 GKDKVsAFDILKEIDELD---PSSEKG--------MFLISCLIRGGVYSEGE 353 Acinetobacter sp. ADP1
BAC62732            295 PNTGKdLFTLLEKADQYLEQLQATDVLpdemindlHFIVANLIKGGLLQQKG 346 Vibrio parahaemolyticus RIMD 2210633
WP_002211867        291 PKQKM-DFYTLLDNWVTKGTVPAVEQQ--------HYVMATLIRGGVFGEKG 333 Yersinia
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