Conserved Protein Domain Family
cas_Csy4

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TIGR02563: cas_Csy4 
CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.
Statistics
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PSSM-Id: 274202
Aligned: 6 rows
Threshold Bit Score: 240.795
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
AAQ59425              3 HYLDIRLLPDADFGPPVLMNALYAKLHRALAAQQRQ----DIGVSFPgydpapsshdgkpL--------PPTLGLTLRLH 70  Chromoba...
lhbprmlnih:CBU_0158   3 YYFDINLLSDAEIPSTVLMNAVCKKLHKLLCDLDST----RIGISFPk------------Y--------KITLGNVLRLH 58  Coxiella...
AAK02392              4 HYIELKAIPQMDMLQSEVIGHCMQILHQFLPHFEG-----RVGVAFPay----------gL--------GRTLGGIVRLF 60  Pasteure...
BAC62733              4 HYRTITFLPEYRN-NEAIAAKCIKELHRFNYKYETR----SIGVSFPlw-------------------gQETVGRKITFV 59  Vibrio p...
WP_002211866          3 HYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPG----RVGVSFPta--------------------gKTLGSQLRLH 58  Yersinia
WP_011927920          3 FYQEITLLPDAEVSLYFLWSKVYGQLHIALADVRNRygidTIGVNFPhy----------vYeeqnhkvvAARLGDQLRIF 72  Dichelob...
AAQ59425             71 GSAA-ALDGLMARRWLSGFA--DHAIVGDIRPVPAG-----ASAVSVRRRQAKSSPARARDRLMRRQGISAEEARRRIPD 142 Chromoba...
lhbprmlnih:CBU_0158  59 GTEF-DLQKLHEVSWLGGMN--GYCKISEVATVPVN-----TKHRTVYRKQPTMSQSKLKRLLKRGTITNDEVKSYKAKM 130 Coxiella...
AAK02392             61 ANQE-DCNQLHQQLLRSGLS--DYALISEVSKTPLPt----EHRSYSRVHRKGQSAIRRTEKRLKSQGRWDESIRADMQQ 133 Pasteure...
BAC62733             60 STNKmELDFLISRRYFVQMTklGYFSISTTQTVPDDcsyvlFKRAHSIDKGTFAGRARELKRLERRALERGEIFDPIAYS 139 Vibrio p...
WP_002211866         59 GSRG-DLLELQSAGWLKGLQ--DYCECSEILPVPAD-----VKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPD 130 Yersinia
WP_011927920         73 ALAEnDLEKLQINQWLERLS--DYVHIKRISKIEPNk----VTGYVVVKRYRYPSLDKVALRFAQFRKINFEEARKHCTK 146 Dichelob...
AAQ59425            143 ETAQRLNLPYLTVD-SASTGQCFRLFVEQ-QAAPSIAAGSFNAYGLSAA----AALPAW 195 Chromobacterium violaceum ATC...
lhbprmlnih:CBU_0158 131 VAEKGLNNPYLDLV-SGTNCQRHRRYIVLgELLDEPVEGGFDQFGLSKT----VTVPWF 184 Coxiella burnetii RSA 493
AAK02392            134 RQQNVAFFPHCHLK-SASTGQRFILAVKE-NRMPQSCVGVFNAYGLSNS----ATVPHF 186 Pasteurella multocida subsp. ...
BAC62733            140 KTTSHAFQSYHSLEeDSSSGNKFRLNIQMkERSGTVGTGKFSSYGLGNTdnslQVVPLI 198 Vibrio parahaemolyticus RIMD ...
WP_002211866        131 SHDKRCDLPFLRLK-SRSSEQYFLLFIEQgTLQASATTGEFSAYGLSVN----ATIPWF 184 Yersinia
WP_011927920        147 YKHQAKNYPFIMLK-SQSNQEYYKLSIRQ-ENAQESVSGRFNVYGINSAtg-iVTVPNW 202 Dichelobacter nodosus
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