Conserved Protein Domain Family
cas3_yersinia

?
TIGR02562: cas3_yersinia 
CRISPR-associated helicase Cas3, subtype I-F/YPEST
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Statistics
?
PSSM-Id: 274201
Aligned: 4 rows
Threshold Bit Score: 1672.72
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
AAK02396        1 MNILLVSQCQKNALTETRRILDQFAERCGDRVWQTAITQAGLETLYKMLRQTARKNTAVACYWTHRKNSAELLWIVGDRR 80   Pasteurella m...
AAQ59429        1 MNILLISQCDKRALTETRRILDQFAERRGDRVWQTPITQAGLDTLRRLLRKTARKNTSVACHWIRGRDHSELLWIVGDAR 80   Chromobacteri...
CAG69246        1 MHVIIISACEKRALKKTRAILDSYAIRTGHSSWQAPMTIEGLKEIRSALKKVATRQTAVAAYINFGMRRMKLAWVVGAKH 80   Acinetobacter...
WP_002221142    1 MNILLISQCHKRALNETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLR 80   Yersinia pestis
AAK02396       81 QFNDQGRVPTNRTQRNILRAEEEMAWQDAYSLQILTALSALLHDVGKSSVGFQAKLDKtkNAPRVADSYRHEWISARLFE 160  Pasteurella m...
AAQ59429       81 RFNLQGAVPTNATQRDVLRADDENDWLSGEDIRLISGLAALLHDLGKACSAFQVRLRP--NGPAGANLYRHEWVSLRLFQ 158  Chromobacteri...
CAG69246       81 KFAHDGAYPVASIKK-QQKLLMLDEWVKAS--SLLAGAAGDMHDIGKASQHFQNKLSPemAGQKIRDDIRHEWLSLKLLQ 157  Acinetobacter...
WP_002221142   81 RFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQG--QGKT-YQPYRHEWVSLRLFQ 157  Yersinia pestis
AAK02396      161 AMIEgCQTDQAWLERLANWQVFEETN--PTWFSKIIQDRPNEn--HFSDFA--YLPPLARRVIWLITSHHRLPFTHDisr 234  Pasteurella m...
AAQ59429      159 AFVG-DDDDAGWLSRLQDPAKIDGASwiKRLKARKLRDGLDAdarHAKPFApgALPPLAAALCWLVLSHHRLPQQAG--- 234  Chromobacteri...
CAG69246      158 QLRK-----NGWNWQLAWKNLDKGLDkfTLGDRQEIEQGIQN--------------ELEAVDYLVVTHHGLLGVEEAlkn 218  Acinetobacter...
WP_002221142  158 AFVE-QKNDIQWLTALSQINPADET----TLMSNLVKDGLDD---YTNPLA--ALPPLAKTIAWLILSHHRLPVYPSk-- 225  Yersinia pestis
AAK02396      235 SQDCIKNLRKYAkltfeSLFKAYKPAVgWVSNgteHPTPQAFWQFQR-VATQSQAWQKHMARWAKKALNHPALFSVSENA 313  Pasteurella m...
AAQ59429      235 DITALRMQSGLA-----ELDAGWNQPL-SEAG---RREIETYWTFPYgLPCDDALWRDRTAALANELLKRQPGQPAPWLD 305  Chromobacteri...
CAG69246      219 DPLALPHYENHVrtlvpSREQIS-----------------------CaGELPDSIFKSHQKRMQRLTALIPKQKTDQLLY 275  Acinetobacter...
WP_002221142  226 DYHRPPKVEEIDdwlhqQLMPVWNSTN-MDSGdwrEKDKLDVWRFPHgTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLN 304  Yersinia pestis
AAK02396      314 DPFLLLLARLCLMTGDHYYSAQDQNEKLGELNFPLLANTYRENHQ---------PKQCLDEHLIGVCQTAVRFAR-LLPK 383  Pasteurella m...
AAQ59429      306 NAYLMHISRLLLMLADHHFSSQTVKQRWQREDEDRIAFANTLKNDpq-----rrFNQTLPEHLTGVARHALAAAR-ALPG 379  Chromobacteri...
CAG69246      276 WKALALHSRAALIHADHIVSAQQYSLQKPE-NVALFANTKLKNIDqdkk--aklQDQPLEWHLHQVGDRASRIAVqMMTD 352  Acinetobacter...
WP_002221142  305 QRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDanahsktieMKQRLDEHNIGVGQNALLLGR-SLPH 383  Yersinia pestis
AAK02396      384 FPRELPRIKQHKPFVQ-LAKDRFAWQNKAVNVARLLQQTSESQGFFGVNMASTGCGKTLANAKMMYALNDSKQGARFTIA 462  Pasteurella m...
AAQ59429      380 LARELPALGMHKALRQrSADPRFRWQDKAFDLAAGIRDKAAAHGAFIVNLASTGCGKTLANARLLYALANPAAGLRCAYA 459  Chromobacteri...
CAG69246      353 LSLSGLSEQTVEYICQpTTHPRFQWQNIAANALQKNIQKHPETPALVFNIAGTGSGKTRMNLRAACTLRPDDP--RIAIA 430  Acinetobacter...
WP_002221142  384 IRKTLPAITRHKGFKQrSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVA 463  Yersinia pestis
AAK02396      463 LGLRVLTLQTGSALKKRLHLSDQNLAVLVGGSAVKKLYALQQEKQNQlaqQGSESAEDWLEDMQvegATYIESAVENEaI 542  Pasteurella m...
AAQ59429      460 LGLRALTLQTGLALRDRLRLDDGDLAIRVGGAASRELFEHYANAAEQ---SGSESSQALLDEDS---HIRFDGNPDHP-L 532  Chromobacteri...
CAG69246      431 LNLRSLTLQTGHALKTSMNLSDDEIAVIIGDTITQTLFDQSKEKIEFvdeDENRPEPIFDAWGEdcnLPDWLHPLFTIeK 510  Acinetobacter...
WP_002221142  464 LGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPr-gTGSQSADKFFSEHQ---YVSYDGSLDDGrL 539  Yersinia pestis
AAK02396      543 LSFLSKDDKTKKLLYAPIVSCTLDHLISASESVRGGHHIVPILRLLTSDLILDEPDDFAQEDLPALSRLVYLAGLFGSRV 622  Pasteurella m...
AAQ59429      533 LQKLSHDPRFNALLAAPVLVCTVDHLTPATESARGGRQIAPMLRLMSSDIVLDEIDDYSMEDLPALTRLVHWAGLLGSRV 612  Chromobacteri...
CAG69246      511 NGRKVLDQKETTILASPLLVSTIDYLIAAGEPHQQGHHVKALLRIMSSDLILDEVDGYEPKALIAVLRLVQLAALYGRNV 590  Acinetobacter...
WP_002221142  540 STWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRV 619  Yersinia pestis
AAK02396      623 LLSSATLTPDFITGLFKAYQAGRKIYNQQKG-IVAALPICCAWVDEFQQVQANCGQDEQFIQQHDEFVRKRAENLAKSPV 701  Pasteurella m...
AAQ59429      613 LLSSATLPPALVSCLFDAYLAGRRHYQANRGqPGLPLNVCCLWVDENDARAADCAEAAAFAAAHLDFARPRAQWLAKQPP 692  Chromobacteri...
CAG69246      591 ICSSATLSLTVAKTIHRAFESGIQMRAALYGnEKKSIIAIIDNELKPQVWLERSNQKSEFDTRYQNHLDDLQVQLLSKPT 670  Acinetobacter...
WP_002221142  620 LLSSATLPPALVQALFNAYRAGRADYQQASGqPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEV 699  Yersinia pestis
AAK02396      702 RRQAEILSLPSLkPREgEELHYGLLADTLLQKAIALHDLHGQTDPHSQKKVSVGLIRFSNIEPMIPLAKALFGLQASEKf 781  Pasteurella m...
AAQ59429      693 RRAAELLPLSGL-PRHgNASFYPALAERLREGALRLHRLNAETDPASGKRVSVGLIRIANIDKLYQLAQSFYALGRLDG- 770  Chromobacteri...
CAG69246      671 HRLAQLLSLSET--------TVLSWKQSVLEGVKQLHQAHAWSFRKTEKKISLGLIRVANIKHAIRLAQFLSDHLPEAK- 741  Acinetobacter...
WP_002221142  700 LRRAELIPVSSA-SVK-NGSVLDAMAAVMRDSMLRLHQAHHQTHPSE-KTVSVGVVRMANIDPLVAIAQRLYAMAAPEN- 775  Yersinia pestis
AAK02396      782 adYQVHLCCYHSRQLLLLRSYLEEKLDKILDRHTP--------EQLFQHEEIALPMSQYKAKNHLFIVLGSPVTEVGRDH 853  Pasteurella m...
AAQ59429      771 --VQIHLCVYHAQYPLLLRSAIERRLDAALSRHDR--------QALFRLPDIRQRLDANPAADQLFIALSSPVSEVGRDH 840  Chromobacteri...
CAG69246      742 ------IACYHANDWLISRFYKEQRLDQLLTRHKDgkkrktgnEQIEQDDEMIDLMQNSDSLNVPFIVIATPVEEVGRDH 815  Acinetobacter...
WP_002221142  776 --YRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQP--------NALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDH 845  Yersinia pestis
AAK02396      854 DYDWAIVDPSSMRSIIQLAGRVWRHRAEKVAeQPNIALLPINWRGLKVry--------qQKDVIYHRPGFESHQ-HKLAT 924  Pasteurella m...
AAQ59429      841 CYSWAIAEPSSMRSLIQLTGRVRRHWTEPYA-PLNLLILQQNIKSWLE-----------PDKAAYLRPGFETEReYRLDS 908  Chromobacteri...
CAG69246      816 DFDWAIIDASSVQSIVQTAGRVNRHRLEKVQ-QPNIVIPEWNYRYCERrdiekrkqqskQRRPVFIYPGYEGYGvSATST 894  Acinetobacter...
WP_002221142  846 DYDWALAEPSSMRSFIQLAGRVQRHRQVAPQ-MANMHILQKNFKALTQk---------dPAIPVYCKPGFETTR-CRLNT 914  Yersinia pestis
AAK02396      925 HKLDQLISQRDLAHIQATPRIVKPEVLQASTQLADLEHHAIASLLNH-----PSENLVNLYWDPRYCNYLLANLPLMSEF 999  Pasteurella m...
AAQ59429      909 HDLAQLLREDEYRHPDARPRLLPSAALQPKTRLADLEHVRLNAELNGdrpqdAQARLCAASCWQIKHAMLHAGLLRRQPF 988  Chromobacteri...
CAG69246      895 YSSQRLNELLPWDHQSQLVINARLRFDQVGCLFAKLDDEQIKDFCKNy---fNDQGEQLFSRSDVDASIMTENIYNITPL 971  Acinetobacter...
WP_002221142  915 HDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGs----AEPLKYYAALWWRKQATWSGEQQRCTPF 990  Yersinia pestis
AAK02396     1000 RKSMAELE---VVCVPDDDSHWGFGFYRAQKRDEETLSALp---eIQYEPIQQDKHAVVQPWLVASLDTVLSDLAEQLNV 1073 Pasteurella m...
AAQ59429      989 RDSQNREEremMLLPNEEEDDFNLVWLAEGDKRYQKNERPsdylmHRISDEALFRADGISPWSNESYLNELERLAAELEL 1068 Chromobacteri...
CAG69246      972 RERNYQETymfEWAESLIVKKQVYGFDEKATKNLKYRKYG-----LVWEQVKFEEIPAKSQAWLALTPQQMKDYCYEYQI 1046 Acinetobacter...
WP_002221142  991 RQSSPDEQh--NLWIDDEADKPVFKRLDSDQIEWKVSDG--------FQDVELTLAAGNSAWIDTDCLRIYQWLAESLNK 1060 Yersinia pestis
AAK02396     1074 VSPEWIApTYLCASLP-QYDGQLDWHYNEVYGFW 1106 Pasteurella multocida subsp. multocida str. Pm70
AAQ59429     1069 PLADCAR-RFGCVSLPfDQNHHQGWRFHPALGFC 1101 Chromobacterium violaceum ATCC 12472
CAG69246     1047 ANEQGCR----ISLTPyNRDEVPTWSYDYGFGVF 1076 Acinetobacter sp. ADP1
WP_002221142 1061 ELNEVSR-QFGEVRLP--KKDGERWHYHPLLGVF 1091 Yersinia pestis
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap