3KOR


Conserved Protein Domain Family
yecD_yerC

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TIGR02531: yecD_yerC 
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TrpR-related protein YerC/YecD
This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence. [Unknown function, General]
Statistics
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PSSM-Id: 188231
Aligned: 8 rows
Threshold Bit Score: 148.344
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3KOR_A         26 RGAALDELFDAILTLENREECYQFFDDLCTVNEIQSLSQRLQVAKXIKQGYTYATIEQESGASTATISRVKRSLQWGNDA 105 Staphylococcus...
AAM23873        7 KDKLVDQLFEAILKLKNIEECYRFFEDIATINEIKALAQRLEVARMLRQKKTYIEIAEKTGASTATISRVNRALNYGANG 86  Caldanaerobact...
AAO05191        7 RGQSLDELFDAILALENREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGYTYATIEEESGASTATISRVKRSLQWGNDA 86  Staphylococcus...
novoz:BL05061   7 RGRELDQLFQSILSLKDLEECYRFFDDLCTINEIQSLAQRLEVARMLRDGNTYHKIETETGASTATISRVKRCLNYGNDA 86  Bacillus liche...
WP_003744192   20 RGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMAQRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDM 99  Listeria
WP_011065161    7 RGEQLDLLFDAILSLKDKEECYKFFDDIATMSEVQSLSQRFQVAKMLTEGNTYSAIEKETKASTATISRVRRCINYGSDG 86  Oceanobacillus...
WP_010965963    9 ESETLDFLCDAILTLENREECYRFFDDIFTINEIKTIEQRLQVAKMLKEKHTYSDISAETGASTATISRVNRCINYGSDG 88  Clostridium ac...
BAD41829       15 RDELTDKLFEAMLTLKTVEEFYRFFEDIATIGEIKALAQRLEVAKMLDAGMTYEDIVAATGASTATISRVKKCLNYGADG 94  Symbiobacteriu...
3KOR_A        106 YTXILDR 112 Staphylococcus aureus subsp. aureus USA300_TCH1516
AAM23873       87 YKIILER 93  Caldanaerobacter subterraneus subsp. tengcongensis MB4
AAO05191       87 YTMILDR 93  Staphylococcus epidermidis ATCC 12228
novoz:BL05061  87 YIMALDR 93  Bacillus licheniformis DSM 13 = ATCC 14580
WP_003744192  100 YDVVFSR 106 Listeria
WP_011065161   87 YNLVLER 93  Oceanobacillus iheyensis
WP_010965963   89 YNIVLRR 95  Clostridium acetobutylicum
BAD41829       95 YRIVLER 101 Symbiobacterium thermophilum IAM 14863
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