Conserved Protein Domain Family
type_III_yscC

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TIGR02516: type_III_yscC 
type III secretion outer membrane pore, YscC/HrcC family
A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Statistics
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PSSM-Id: 274174
Aligned: 9 rows
Threshold Bit Score: 505.758
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_014524685  91 TYSHYSEQEQLTALLADFGRTQGLATSFSPGV-T-GTVSGRFEDVAPEKFLQGMKAAFGVSWYRLGPTLHFYHEAETTRI 168 Desulfovibrio v...
WP_011191567  57 PFFIYSRGMTVSELLKDLGMNYGIPVVISSEI-N-EHFTGKIRDKTPEKILSELAGRYNITWYYDGETLYFYPVQSIKRE 134 Yersinia pseudo...
WP_012228712  40 PYVYVAKGESLRDLLIDFSANYDATVVVSDKI-N-DKVSGQFEHDNPQDFLQHIASLYNLVWYYDGNVLYIFKNSEVASR 117 Yersinia pestis
WP_000336091  34 EYFIITKSSPVRAILNDFAANYSIPVFISSSV-N-DDFSGEIKNEKPVKVLEKLSKLYHLTWYYDENILYIYKTNEISRS 111 Escherichia coli
WP_020924271  23 GSGFVAKDDSLRTFFDAMALQLKEPVIVSKMAaR-KKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIYDASEMRNA 101 Salmonella ente...
AHI66620      62 ERHFVANDASIGVLLNALSGRLHKPVVASEKV-RrKHVTGEFDLSQPRALLARLGESMALLWYDDGASIYIYDNSEIKNA 140 Burkholderia th...
WP_011093661  52 AYAYSAEQTPLSAILADFANSHGVDLVLGNIA-D-NEVTAKIRADNPTLFLDRLALEHRFQWFVYNNALYVSPQDEQASV 129 Pectobacterium ...
WP_014507120  15 phanaasvpwhsrsfkyvadrkdlkevlrdlsasqsittwispevtgtlsgkfeatpqkflddlsgtfgfvwyydgsvlr 94  Xanthomonas cam...
KGC46334      15 rdfaasqgvatsiagnvqgtvtgrfdlspqrfldtlaatfgfvwfydgnilsitnandmtrqvlpldhasigelrsalrq 94  Burkholderia ps...
WP_014524685 169 FISPRVMSAESLYRMLRQ-SSVLSPQLPAELMPGGAMVVVSGPPAYLDQIQAAVTAFEEAQTGNFG------MKVFPLKY 241 Desulfovibrio v...
WP_011191567 135 FISPDGLAANTLVKYLQRgDVLAGKNCAIKAIPHLDTLEVKGVPICIERVKSVSKMLSEQVRHQNQnk--etVKVFPLKY 212 Yersinia pseudo...
WP_012228712 118 LIRLQESEAAELKLALQR-SGIWEPRFGWRPDASNRLVYVSGPPRYLELVEQTAAALEQQTQIRSEktgalaIEIFPLKY 196 Yersinia pestis
WP_000336091 112 IITPTYLDIDSLLKYLSDtISVNKNSCNVRKITTFNSIEVRGVPECIKYITSLSESLDKEAQSKAKnk--dvVKVFKLNY 189 Escherichia coli
WP_020924271 102 VVSLRNVSLNEFNNFLKR-SGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVVNAATMMDKQNDGIELgr--qkIGVMRLNN 178 Salmonella ente...
AHI66620     141 VVSMRHATVRNLRDFIRQ-TRLYDPRFPVRGDDLSNTFYVTGAPVYVNLVAAAARYLDEVRSNEASdr--qvVRVVQLHN 217 Burkholderia th...
WP_011093661 130 RLEISPDAAPDIKQALSG-IGLIDSRFGWGELPEEGVVLVTGPKAYIDLIRNFSQQREKQDERRk-------VMIFPLRY 201 Pectobacterium ...
WP_014507120  95 iwganetknatlslgaastsalrdalarmrlddprfpvrydetahlavvsgppgyvdtvaaiakqveqvarqrdatevqv 174 Xanthomonas cam...
KGC46334      95 igmddkrfpifydevsgtvlvsgpaqyvqivtdiaqrldmlsgrrngstirifklkhawaadrnvqidgntvtmpgiatv 174 Burkholderia ps...
WP_014524685 242 AWAEDITVNSMDKTVTLPGVASILRAMV----------------------------------------S----------G 271 Desulfovibrio v...
WP_011191567 213 ASAADSDYQYRDQNVRLPGLVSVLRELN----------------------------------------Q----------G 242 Yersinia pseudo...
WP_012228712 197 ASASDRTIHYRDDEVAAPGVATILQRVL----------------------------------------SdatiqqvtvdN 236 Yersinia pestis
WP_000336091 190 ASATDITYKYRDQNVVVPGVVSILKTMA----------------------------------------S----------N 219 Escherichia coli
WP_020924271 179 TFVGDRTYNLRDQKMVIPGIATAIERLL----------------------------------------Q----------G 208 Salmonella ente...
AHI66620     218 SFVVDRQYTLRDKEVDIPGMATVLGRIF----------------------------------------G----------P 247 Burkholderia th...
WP_011093661 202 ASVSDRTLQYRDQKITIPGVATILNELMdgqraapagasgpmpvqpdtgmeamrdstrslmtrlatrtS----------P 271 Pectobacterium ...
WP_014507120 175 fqlhyaqaadhttriggqdiqvpgmasllrniygvrgaptaalpgpganfgrvqpigggssntfgnsgqrqsggsgilgl 254 Xanthomonas cam...
KGC46334     175 lanlyrvrgragtgqssaapgvqrvqpmgdvsgsayggnrlmpplppsmmgggrgdafakgasidgesggaasaapggap 254 Burkholderia ps...
WP_014524685 272 SpssatrvtqetatvdklsgtglisqgrqqkesgqsnqaqrggqasQ-QD------------------------------ 320 Desulfovibrio v...
WP_011191567 243 N---------------------------------------------NlPL------------------------------ 247 Yersinia pseudo...
WP_012228712 237 Q---------------------------------------------R-IP------------------------------ 240 Yersinia pestis
WP_000336091 220 Gslps-------------------------------------tgkgA-VE------------------------------ 231 Escherichia coli
WP_020924271 209 E---------------------------------------------E-QP------------------------------ 212 Salmonella ente...
AHI66620     248 A---------------------------------------------R-QGapaaaadatarggaggaagkpafsladalp 281 Burkholderia th...
WP_011093661 272 G---------------------------------------------R-SG------------------------------ 275 Pectobacterium ...
WP_014507120 255 paswfgagspservpvspplpgsgnsanapasvwpemsqarrdaplA-VD------------------------------ 303 Xanthomonas cam...
KGC46334     255 R---------------------------------------------T-EE------------------------------ 258 Burkholderia ps...
WP_014524685 321 -------SGG------------------------------------AQ--DGQQV----------------------SIM 333 Desulfovibrio v...
WP_011191567 248 -------AGGnq--------------------------------pdGN--QASSP----------------------VFS 264 Yersinia pseudo...
WP_012228712 241 -------QAA------------------------------------TR--ASAQA----------------------KVE 253 Yersinia pestis
WP_000336091 232 -------RSG------------------------------------NL--FDNSV----------------------TIS 244 Escherichia coli
WP_020924271 213 -------LGNivsseppampafsangekgkaanyaggmslqealkqNA--AAGNI----------------------KIV 261 Salmonella ente...
AHI66620     282 apldagnAPG------------------------------------GA--NSANPtnaaspmggavggvalpasdgvRAV 323 Burkholderia th...
WP_011093661 276 -------EAS------------------------------------SR--VTLSG----------------------KIS 288 Pectobacterium ...
WP_014507120 304 -------AGS------------------------------------GGelASDAP----------------------VIE 318 Xanthomonas cam...
KGC46334     259 -------VSA------------------------------------E---RDELP----------------------IIQ 270 Burkholderia ps...
WP_014524685 334 ADPRVNAVIVHDAVYRMPYYESVIGDLDRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGAdvstgtdk--- 410 Desulfovibrio v...
WP_011191567 265 ADPRQNAVIIRDRQANMPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFN----------- 333 Yersinia pseudo...
WP_012228712 254 ADPSLNAIIVRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVIktt-------- 325 Yersinia pestis
WP_000336091 245 ADPRLNAVVVKDREITMDIYQQLISELDIEQRQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFN----------- 313 Escherichia coli
WP_020924271 262 AYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSITIGDK---------------- 325 Salmonella ente...
AHI66620     324 AYPDTNSVILVGRLDKVQDMEALIRSLDVEKRQIELSLWIIDIRKSRLDQLGIDWQGALNAp------------------ 385 Burkholderia th...
WP_011093661 289 ADVRNNALLIRDDEKRRAEYQQLVEHIDVPQNLVNIDAIILDVDRTALSRLEANWQAQLG--------Nv---------- 350 Pectobacterium ...
WP_014507120 319 ADPRTNGILIRDRPERMAAYGTLIQQLDNRPKLLQIDATIIEIRDGALQDLGVDWRFHSRRVDVQTGDGrggqlgydg-- 396 Xanthomonas cam...
KGC46334     271 PDPMTNSVLIRDLPDRLAQYAPLIQQLDIRPRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGntaqndysggq 350 Burkholderia ps...
WP_014524685 411 ---------ftplpvpGVPQGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQVQG 481 Desulfovibrio v...
WP_011191567 334 ----------------STFAKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKLQG 397 Yersinia pseudo...
WP_012228712 326 -------------gdqSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDHHETYYVKVTG 392 Yersinia pestis
WP_000336091 314 ----------------SSTAQANI--SSSVISNASNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKVSG 375 Escherichia coli
WP_020924271 326 -----------------LGVSLNQ--SSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIG 386 Salmonella ente...
AHI66620     386 ----------------GIGVGFNNRGGNVTTLDGTKFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLIG 449 Burkholderia th...
WP_011093661 351 ----------------SAGSTMMMGRSTLFVSDFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFITATG 414 Pectobacterium ...
WP_014507120 397 --------slsgaaaaGAAAPLGGTLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRVSG 468 Xanthomonas cam...
KGC46334     351 inpffgtttlagnavvN-AAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATLDNSEAVMDNTTRFFVKVSG 429 Burkholderia ps...
WP_014524685 482 YQAVDLFKVEAGTVLRVTPHIINNDDGTd------AIKLVVSVQDDQNN--QttptSTSTTQ--AIPPIKQTKINTQAII 551 Desulfovibrio v...
WP_011191567 398 EKVAKLESVTSGSLLRVTPRMIETEGVQ-------EVLLNLNIQDGQQQ--A----STNSNE--PLPEIRNSDISTQATL 462 Yersinia pseudo...
WP_012228712 393 KEVAELKGITYGTMLRMTPRVL-TQGDKs------EISLNLHIEDGNQKp------NSSGID--GIPTISRTVVDTVARV 457 Yersinia pestis
WP_000336091 376 EKVASLESITSGTLLRVTPRILDDSSNSltgkrreRVRLLLDIQDGNQS--TnqsnAQDASS--TLPEVQNSEMTTEATL 451 Escherichia coli
WP_020924271 387 ERNVALEHVTYGTMIRVLPRFSADG----------QIEMSLDIEDGNDK--TpqsdTTTSVD--ALPEVGRTLISTIARV 452 Salmonella ente...
AHI66620     450 ERTVQLDHVTYGTLVNVLPRLTRDAS---------QVEMIVDIEDGNTDgaTs--dGQIVIDnnTMPLVNRTEINTVARV 518 Burkholderia th...
WP_011093661 415 ERVADIQPVTAGTSLQVTPRVIG-EGAQr------SIQLVIDIEDGQv--------ETGREG--EASGVKRGTVSTQALI 477 Pectobacterium ...
WP_014507120 469 YASADLYNLSAGVSLRVLPSVVP-GSPNg------QMRLDVRIEDGQl--------GANTVD--GIPVITSSEITTQAFV 531 Xanthomonas cam...
KGC46334     430 YASAELYSVSTGVSLRVLPMIVQ-DGSEt------RIKMNVHVTDGQl--------TGDQVD--NLPVITSSEINTQAFV 492 Burkholderia ps...
WP_014524685 552 GAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRMERLILITPKVVRL 610 Desulfovibrio vulgaris
WP_011191567 463 QVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLIKAVPVNA 521 Yersinia pseudotuberculosis
WP_012228712 458 GHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELTRRTVRLFIIEPRIIDE 516 Yersinia pestis
WP_000336091 452 SAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATPIKS 510 Escherichia coli
WP_020924271 453 PHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVD 511 Salmonella enterica
AHI66620     519 PHEMSLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRA 577 Burkholderia thailandensis H0587
WP_011093661 478 GENRALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLVGD 536 Pectobacterium atrosepticum
WP_014507120 532 NEGQSLLIAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVSP 590 Xanthomonas campestris
KGC46334     493 GQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALFRYHSDSQNHMERVFLLSPRIIDP 551 Burkholderia pseudomallei
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