Conserved Protein Domain Family
type_III_yscP

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TIGR02514: type_III_yscP 
type III secretion system needle length determinant
Members of this family include YscP of the Yersinia type III secretion system and equivalent proteins in other animal pathogen bacterial type III secretion systems. The model describes the conserved C-terminal region. N-terminal regions are poorly conserved and variable in length with some low-complexity sequence.
Statistics
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PSSM-Id: 274172
Aligned: 8 rows
Threshold Bit Score: 140.27
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAC59933     307 TQGDVILKGISPPQ---PTQPTREVNQLIQQLVDKVYVALPTAsNEKEVRLFLSegQLKGGEIHIKL-DSQGYSVTIRQE 382 Vibrio parahaem...
AAS13320     298 AQGDIILKNVETHA---PQNRAQDVNELINKLVDKIYVSLPSA-NEKEVRLLLNegQLKGGEISIKQ-DSSGYSVLIKQE 372 Vibrio harveyi
AAR27894     246 TPGDLLLARVTP------SFDHHELGQLISRLAVDMHLELGRLeRPPLLQLSLP--ALGELTIRIDR-HQGMLQVEMLAS 316 Aeromonas hydro...
CAD56762     135 TPGDLQLARLAP------AESNRELCQLLERLAVDIYQELGRPeRPPLLRLTLP--QLGDLSIRIAH-HNGELQIEILAT 205 Aeromonas salmo...
P40295       331 TPGDHLLATMRATR---LASVSEQLIQLAQRLAVELELRGGSs-QVTQLHLNLP--ELGAIMVRIAE-IPGKLHVELIAS 403 Yersinia pestis
CAE16141     250 LPGERILATMQAT-----STISPLLEVLIDKLSVEISIELTQQpRPATLHLTLP--NLGALEIQLTS-EHGKLQIEILAN 321 Photorhabdus lu...
AAS94477      93 MQGLLTLHGAEAAEgaqQPHAMTDADSLASTLVERILVSSPGs-GTAEIRIILGdgVLPGTEIHLARgADGLLSVSLQTT 171 Desulfovibrio v...
WP_010895580 240 TPGDRLLARLLASSg-sRPLPLADLARLLDAVQGRIQVASAAEsHAARLQVRLP--QLGAVEVQVLH-GHGQLQIEISAS 315 Pseudomonas aer...
BAC59933     383 -HALSIINQQARQDLAERLNRMGFEQPLRVSISEQTSQhghtqqdQQQSRQQRSVYEEWQPEA 444 Vibrio parahaemolyticus RIMD 221...
AAS13320     373 -HALSLINQTAKQELTERLQRLGIDQPIRIAVSEQMNQqq----dQQRSRQQRSIHDEWKPED 430 Vibrio harveyi
AAR27894     317 -EQGSQLLNQGRGELIDRLQRLYPGERVAVDLFTRGDS-------EQGSRQKRSIYDEWDADA 371 Aeromonas hydrophila
CAD56762     206 -AQGELLLNQGRSDLVDRLQRLYPGERVALDLFNQADS-------ERGSRHKRSIYEEWDADA 260 Aeromonas salmonicida subsp. sal...
P40295       404 -REALRILAQGSYDLLERLQRIEP---TQLDFQASDDS-------EQESRQKRHVYEEWEAEE 455 Yersinia pestis
CAE16141     322 -PAAQQLLKQARFELIERLQLLYPTQTVELSLPPQTDS-------EHGSRQRRSVYEEWKKDA 376 Photorhabdus luminescens subsp. ...
AAS94477     172 dPGSFQSLVAARDGLQQRLERLEQGQ-VRVEVSQEARPd------DGDADRRSAGYMTQQPDE 227 Desulfovibrio vulgaris str. Hild...
WP_010895580 316 -PGSLALLQQARGELLERLQRLHPEQPVQLTFNQQQDS-------GQRSRQRRYLHEEWQAE- 369 Pseudomonas aeruginosa
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