Conserved Protein Domain Family
NrdE-prime

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TIGR02510: NrdE-prime 
ribonucleoside-diphosphate reductase, alpha chain
This model represents a small clade of ribonucleoside-diphosphate reductase, alpha chains which are sufficiently divergent from the usual Class I RNR alpha chains (NrdE or NrdA, TIGR02506) as to warrant their own model. The genes from Thermus thermophilus, Dichelobacter and Salinibacter are adjacent to the usual RNR beta chain. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism]
Statistics
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PSSM-Id: 188230
Aligned: 3 rows
Threshold Bit Score: 954.366
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
WP_013060643  13 ADFGWLNDEARTFLRRGYLLEGTGPEDRVREIAEHAEGLLEMDGFADRFYEYMARGYYSLASPVWANFGLDRGLPISCFG 92  Salinibacter ruber
WP_011174404   9 EPWYWANAHTRLYMRRGYLLPGVSVEERVKEIAQRAEALTKVEGFGRKFLEYVARGWYSLATPIWANYGLRRGLPISCYG 88  Thermus thermop...
NP_932465     22 EIPEFYTTQGWSMFKKNYQYKGETVRGAFRRVASTLAKHDIRPEAEERYFDLLWSGKLAMATPVFCNTGTDRGMPVSCAG 101 Aeromonas phage...
WP_013060643  93 SYIDDSMEAILDTHAEVGMMTKVGGGTSGYFGDVRPRGASITNNGTSNGTYPFAQLFDKIINVVS--QGETRRGHFAGYI 170 Salinibacter ruber
WP_011174404  89 TYVEDDTASILRAVAEVGMMSKQGGGTSLYLGRLRPRGAPIRDNGESNGSFAFASLFDRVIEVFN--QGSTRRGQCAAYL 166 Thermus thermop...
NP_932465    102 SYVGDSVLDFYEGQTEVAMLAKNGFGTASYLGDIRPRGSDISTS--HNKADGLVPVFDNFVNTKTkvAAAGRRGEWAGYV 179 Aeromonas phage...
WP_013060643 171 DIEHPDVEEWLNIQTEGDAIQTMMYGVVVGDDWMEAMIDGDSDKRALWAKVVESRMNLGIPYILFRGNVQDGRPQVYKDK 250 Salinibacter ruber
WP_011174404 167 DVEHPDLEEWLSIQREHSPVQSLFWGVSVGDRWLEEMIAGDGEKRARWAKMLKSRAEVGIPYLFFRDNANQKAPEVFRAL 246 Thermus thermop...
NP_932465    180 DFSHGDFWELQGYVLKNPASAHVGWVFEKED--YEKLKARDPEYMARWNELMYMRARTGKGYMWKNWIANELAPQAIKNS 257 Aeromonas phage...
WP_013060643 251 GYDVHASNLCSEVLLPSGPDESFVCCLSSMNALHYDDWKDTDAVETLTQFLDAVMQEFIDGAKGMAH--MDRAVRFAERH 328 Salinibacter ruber
WP_011174404 247 GKTIWASNLCTEIMLPSSEEESFVCCLSSLNLLHYEEWKDTDAVETLVIFLDSVLDDFIEKAEGIPY--MERAVRFAKRY 324 Thermus thermop...
NP_932465    258 GIPIRSSQLCTEIALPSDDMHTFTCILSSLNVSLWDEIT-ADDIKWSVRFLDSVCSEFLAKAKELSYdtLHKAIRFTEKA 336 Aeromonas phage...
WP_013060643 329 RAIGIGILGWHSYLQSNRIPFESAEASLTGAEIAKTIKERSYAASAELADRFGE---PPVLEGYGRRNATTMAVAPTKSS 405 Salinibacter ruber
WP_011174404 325 RAIGLGVLGWHSYLQSQRIPLESPEAFRRNAEIFKTIRERAEEASRWLRKRHPEdelAGVGELKERRNATLLAIAPTKSS 404 Thermus thermop...
NP_932465    337 RALGLGTLGFHTYLQMNDIAFESGAAHILNNQLYAEIKKAAEEGSRELAEEYGE---PEWCKGTGMRNATLITIAPNMSS 413 Aeromonas phage...
WP_013060643 406 SFILGQVSPSIEPIKSNYFVQDRAKMKVTYKNPHLKALLQEKGRD---TDAVWDEIALRDGSVQHLDFLSDEEKDVFKTF 482 Salinibacter ruber
WP_011174404 405 AFILGQVSPSIEPYTSNYYLKDLQKARVPFKNPFLEEVLREKGKD---EEKVWRSILEHNGSVQHLDFLTDEEKAVFKTF 481 Thermus thermop...
NP_932465    414 ALLAGGVSQGVEPLVCNSFIQQSNAGDFVRSNPVLAKVLKDRLTDkeiQELMEDIATYHNGSVQHLDILTDHEKSVFKTA 493 Aeromonas phage...
WP_013060643 483 SEISQMAIIDQAAGRQKHIDQSQSLNLAIDPgSTPVKDINRLYVEAWKKGVKSLYYQHGVNAAQSFSRD-LLACKVCEA 560 Salinibacter ruber
WP_011174404 482 AEISQMTLVNLAASRQKHIDQGQSLNLVIHP-EAPPRDVNALVLHAWRSGLKALYYQFSQSVAQAYSRDlLLSCQACEG 559 Thermus thermoph...
NP_932465    494 YEIDQHAIIRLASARQRHIDQAQSINLFFSAdEKESVIASVHRAFMDDPRLKSLYYLRSERGVKASSGK--SDCLACEG 570 Aeromonas phage ...
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