1R76,1GXM


Conserved Protein Domain Family
pec_lyase

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TIGR02474: pec_lyase 
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pectate lyase, PelA/Pel-15E family
Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase. [Energy metabolism, Biosynthesis and degradation of polysaccharides]
Statistics
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PSSM-Id: 274150
Aligned: 8 rows
Threshold Bit Score: 434.588
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1R76_A    94 QTPAGGWGKNQPrdgalRLPGQHYTGENVAKVKSGSNdldaardrdwHYVGTIDNDATVTEIRFLAQVVSQla---pEEA 170 Azospirillum irakense
AAG24437  44 QMDHGGWSKDMP-----QMYTRDWNGREAKSVWTSNG----------QELGTIDNDATVSEIRVVAEAYQL------TKD 102 Bacillus alcalophilus
AAM39441  38 QTASGGWSKQYKgv--aVDYTRTFTAAEIAELKQPGR----------KDDATIDNKATTYEITYLSTAFKN------EKN 99  Xanthomonas campest...
AAD25394 118 QTPAGGWGKNQPrdgalRLPGQHYTGENVAKVKSGSNdldaardrdwHYVGTIDNDATVTEIRFLAQVVSQla---pEEA 194 Niveispirillum irak...
AAO77361  61 QQVTGGWPKNIY-------MPAELTEQEYAKARNAKEd---------VNQSTIDNNATTTEIQYLARLYQA------TQK 118 Bacteroides thetaio...
AAG29353 361 QQNNGGWPKNLD----------------YNSVGNGGGg---------NESGTIDNGATITEMVFLAEVYKS------GGN 409 Cellvibrio japonicus
AAP41854  82 QNPDGGWAKNLDlqriyTIQELKQIREQNKNVPPVTYglk-----tsSNASTMDNGNIHSQIKYLCQVYQQvkddksIDS 156 Treponema pectinovorum
1GXM_A    44 QQNNGGWPKNLD----------------YNSVGNGGGg---------NESGTIDNGATITEMVFLAEVYKS------GGN 92  Cellvibrio japonicus
1R76_A   171 APYRDAALKGIEYLLASQFPNGGWPQVWPleg-------gyHDAITYNDDALVHVAELLSDIAAGRD--GF--GFVPPAI 239 Azospirillum irakense
AAG24437 103 ERFKASVHNGIDFLYKLQYPSGGFRQVYPqrgsdpsssvwySNYVTFNDHAMVNVLRLLEDARQGKApfEG--DLFNDSQ 180 Bacillus alcalophilus
AAM39441 100 AKYIAAARRGVEYLLKAQYANGGWPQFYPdls-------syHHQITYNDDAMVRVLNLLQDIGEGKGd-TG--AQLRGSH 169 Xanthomonas campest...
AAD25394 195 APYRDAALKGIEYLLASQFPNGGWPQVWPleg-------gyHDAITYNDDALVHVAELLSDIAAGRD--GF--GFVPPAI 263 Niveispirillum irak...
AAO77361 119 EKYKEGVLKGIQYLLKAQYDNGGWPQFYPrpt-------gyYVQITYNDNAMVRVMQQLREIYEKQS--PY--TFIPDET 187 Bacteroides thetaio...
AAG29353 410 TKYRDAVRKAANFLVNSQYSTGALPQFYPlkg-------gySDHATFNDNGMAYALTVLDFAANKRApfDT--DVFSDSD 480 Cellvibrio japonicus
AAP41854 157 KRYLDCATKALTWIFNAQHPVSGGFTGAD------------VYAITYNDNVMTNSLTLLKDISNGKD--YF--CVFPEET 220 Treponema pectinovorum
1GXM_A    93 TKYRDAVRKAANFLVNSQYSTGALPQFYPlkg-------gySDHATFNDNGMAYALTVLDFAANKRA--PFdtDVFSDND 163 Cellvibrio japonicus
1R76_A   240 RTRALEATNAAIHCIVETQVVQ-----DGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQ 314 Azospirillum irakense
AAG24437 181 RKQMAASIEGGLDYILQAQIVA-----NGKKTAWGQQHDPVTLQPQQGRAYEHPSIATDESVGIVQWLEDQPNQSAAVQE 255 Bacillus alcalophilus
AAM39441 170 GARAQQAVTKGLECVLATQVKI-----GGTLTIWGAQYDEVTLKPAKARAYELASLSSSESVSIVRFLMRQPSPSAKIKT 244 Xanthomonas campest...
AAD25394 264 RTRALEATNAAIHCIVETQVVQ-----DGKRLGWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQ 338 Niveispirillum irak...
AAO77361 188 CQQARKAFDKGIECILRTQVRQ-----NGELTVWCAQHDRITLEPCKARAYELPSLSGQESDNIVLLLMSLPHPSEKVIE 262 Bacteroides thetaio...
AAG29353 481 RTRFKTAVTKGTDYILKAQWKQ-----NGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQP-QTAEIER 554 Cellvibrio japonicus
AAP41854 221 RQKAKSAYERGIECILKTQITLtlddgTKILTAWCQQHNHETLKPVWAREFEPPSVCSFESFKVLRFLMTEENPTPEIKK 300 Treponema pectinovorum
1GXM_A   164 RTRFKTAVTKGTDYILKAQWKQ-----NGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQP-QTAEIEQ 237 Cellvibrio japonicus
1R76_A   315 AIRGGVAWLNTSV--IRDRAWVKSDQGy-------------QLVTEQGAKpLWSRFYSLDG------------------- 360 Azospirillum irakense
AAG24437 256 AIAAARAWMDEAR--VADTRYERRVEP--------------HFFYEPGAE-IWYRFYQIGT------------------- 299 Bacillus alcalophilus
AAM39441 245 AVQAAATWFDTHR--MRDLATKKIDDPtqet------gkdvILVAQPGAS-LWARFYDLQN------------------- 296 Xanthomonas campest...
AAD25394 339 AIRGGVAWLNTSV--IRDRAWVKSDQGy-------------QLVTEQGAKpLWSRFYSLDG------------------- 384 Niveispirillum irak...
AAO77361 263 SIESAVKWFKKSE--IKGVQKEYFTNSdgk--------rdyRMIPCEDCPvLWARFYELDT------------------- 313 Bacteroides thetaio...
AAG29353 555 AVRAGVAWFNSPRtyLEGYTYDSSLAAt------------nPIVPRAGSK-MWYRFYDLNT------------------- 602 Cellvibrio japonicus
AAP41854 301 AIIAGCEFFDRNDvkIFGKKLVATKLAsprkengrtyntdkTLQDSDPSDvLWARFYALDSsfdvvsgarkpivgtypsv 380 Treponema pectinovorum
1GXM_A   238 AVRAGVAWFNSPRtyLEGYTYDSSLAAt------------nPIVPRAGSK-MWYRFYDLNT------------------- 285 Cellvibrio japonicus
1R76_A   361 NKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKAL 398 Azospirillum irakense
AAG24437 300 NRPIFSGRDGVIHHDIMNVEQERRYGYAWAGTWPQKLR 337 Bacillus alcalophilus
AAM39441 297 QRPLYANREGVALTDYMKVPNERRVGYAWHGTWPDKLL 334 Xanthomonas campestris pv. campestris str. ATCC 33913
AAD25394 385 NKPVFGDRDKTIHDDVMGISQERRTGYAWYTTSPQKAL 422 Niveispirillum irakense
AAO77361 314 NRPFFSDRDGIKKYDISEIGHERRNGYSWYNKDGNKVL 351 Bacteroides thetaiotaomicron VPI-5482
AAG29353 603 NRGFFSDRDGSKFYDITQMSLERRTGYSWGGNYGTSII 640 Cellvibrio japonicus
AAP41854 381 LKPIWCDRGCKYVDSFNELSFERRNGYGYTTTSGRSLS 418 Treponema pectinovorum
1GXM_A   286 NRGFFSDRDGSKFYDITQMSLERRTGYSWGGNYGTSII 323 Cellvibrio japonicus
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