2B3W


Conserved Protein Domain Family
ribofla_fusion
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TIGR02464: ribofla_fusion 
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conserved hypothetical protein, ribA/ribD-fused
This model describes a sequence region that occurs in at least three different polypeptide contexts. It is found fused to GTP cyclohydrolase II, the RibA of riboflavin biosynthesis (TIGR00505), as in Vibrio vulnificus. It is found fused to riboflavin biosynthesis protein RibD (TIGR00326) in rice and Arabidopsis. It occurs as a standalone protein in a number of bacterial species in varied contexts, including single gene operons and bacteriophage genomes. The member from E. coli currently is named YbiA. The function(s) of members of this family is unknown.
Links
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Statistics
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PSSM-Id: 274144
Aligned: 11 rows
Threshold Bit Score: 211.853
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
2B3W_A        17 INFYSTsd------dYGDFSNFAAWPIKVD-------GKT--------------WPTSEHYFQAQKFL---D---EKYRE 63  Escherichia coli
BAC10016       3 IYFYRVkd------aYGSFSNFSPHGFTLE-------GYY--------------WPTAEHYYQAHKFFgtpY---EAFGH 52  Thermosynechoco...
P30176        17 INFYSTsd------dYGDFSNFAAWPIKVD-------GKT--------------WPTSEHYFQAQKFLdekY------RE 63  Escherichia col...
BAC70304      31 LHFWGHrprpdgrvgASCLSQWWPSPFTVD-------GVE--------------YTTAEHWMMAAKARlfgD---EEAQR 86  Streptomyces av...
BAB79866      21 LFFLGHtknkngkatKACFSQWYLSDFTVN-------GVL--------------YNCAEKYMMAEKARlfkD---YETLE 76  Clostridium per...
AAO47450       8 IMFWGK---------EDIYSNFYPIKFKHQ-------GRT--------------FNNSEQAFMWRKARyfnD---FQIAG 54  Staphylococcus ...
WP_010999155   3 IYFYKVwq------pYGCFSNFSPHSIEIQ-------GTY--------------WLTVEHYYQAQKFVgsvD---AAIIP 52  Nostoc sp. PCC ...
WP_010887906  71 LFFYRT---------AHPFSNFHPSPFSAS-------GRQ--------------FHTAEQYIMHRKAEefgD---HASAK 117 Deinococcus rad...
NP_503983     16 VLFYEa---------ACVFSNFYPSGFEAK-------PVEnflkdtekkekllkFTCSEQYFMYNKALlvgD---MDIAE 76  Caenorhabditis ...
NP_001256092  23 TLFFRK---------VSPFSNHHPADFICDeainckePKT--------------FCCSEQYYMYNKASllmD---SKLMA 76  Caenorhabditis ...
BAD21976     454 ISFYKTwd------tFGAFSNFSPHPIHMPde----nGDYf------------tWPTVEHYYQAHKFIgvdDpqaREIVQ 511 Japanese rice

2B3W_A        64 EIRRVSSPMVAARMGRD--RSK----PLRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGG 137 Escherichia coli
BAC10016      53 AIRIAPTPEAAAQLGRS--GRY----PVHPQWDQLKQAVMWRALVAKFTTHAELRELLLATVDEELVEDSPVDSYWGCGG 126 Thermosynechoco...
P30176        64 EIRRVSSPMVAARMGRD--RSK----PLRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGG 137 Escherichia col...
BAC70304      87 RAIEAPTPAHAKKAGRL--VRG----FDEAIWARERYGIVVEGSIHKFAAHMDLQAFLLGTSGRVLVEASPLDRVWGIGL 160 Streptomyces av...
BAB79866      77 EILSAENQKEIKDLGRK--VKN----FNEELWNREKYEIVKRGNLAKFSQNEDIKEFLLSTGDKIIVEASPYDSIWGIGM 150 Clostridium per...
AAO47450      55 EILNAKNPNHAKSLGRK--VRN----FNEEQWNKVRYNIMVEVVKDKFMTTHLKQRILDTDVRKDFVEASPYDKIWGVGL 128 Staphylococcus ...
WP_010999155  53 AIRASKTPEEAAALGRC--TSR----QLRQDWDLVKTIVMREAVLKKFLTHTDIREILLSTGNEILVEDSSCDYFWGCGA 126 Nostoc sp. PCC ...
WP_010887906 118 AILQARTPAECKALGRR--VQG----FSESHWAQVRGQVAFDAAWHKFRSSRRLREFLLDTGELILVEAAPNDRIWGIGY 191 Deinococcus rad...
NP_503983     77 QILKETNPMKMKLLGRKlsMTK----EQLKLWSQKSKDVMYRACLEKFSQNEDCRMILFRTHGMKLVEASPTDKIWGIGL 152 Caenorhabditis ...
NP_001256092  77 AILEATCPKTMKTMCSKwsLKG----WKDSVWDENKEEVMRIGCLAKFRASRHLRYALFLTTGSKLVECSPFDKIWGIGK 152 Caenorhabditis ...
BAD21976     512 EIKLAKSPEEAARIGRT--RQRefqeLVRPDWDSIKIEVMYRATKRKFSTYSHLTDMLLSTAGSVLVEASPHDLFWGGGR 589 Japanese rice

2B3W_A       138 HGk-----------GKNRLGYLLMELREQLA 157 Escherichia coli
BAC10016     127 DRq-----------GSNYLGRLLMHLRHCLR 146 Thermosynechococcus elongatus BP-1
P30176       138 HGk-----------GKNRLGYLLMELREQLA 157 Escherichia coli K-12
BAC70304     161 AAdderagdpdrwrGPNLLGFALMEARERLA 191 Streptomyces avermitilis MA-4680 = NBRC 14893
BAB79866     151 GAkdeniedptawkGENLLGFALMEVRDLLN 181 Clostridium perfringens str. 13
AAO47450     129 KAndpkileqsnwkGQNLLGKVMEDVRVHCI 159 Staphylococcus phage K
WP_010999155 127 DKt-----------GQNHLGKILMSVREEIR 146 Nostoc sp. PCC 7120
WP_010887906 192 SEqdawe--hrdqwGENLLGQALMQVRERLR 220 Deinococcus radiodurans
NP_503983    153 DKadqrcedernwrGSNWLGEVLDQVREELW 183 Caenorhabditis elegans
NP_001256092 153 DMqaaqw--aplssGKNLLGKILDGIREELW 181 Caenorhabditis elegans
BAD21976     590 EGe-----------GMNYLGRLLMQLRSEIL 609 Japanese rice
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