Conserved Protein Domain Family
rpoH_proteo

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TIGR02392: rpoH_proteo 
alternative sigma factor RpoH
A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoH and further restricted to the Proteobacteria. This protein may be called sigma-32, sigma factor H, heat shock sigma factor, and alternative sigma factor RpoH. Note that in some species the single locus rpoH may be replaced by two or more differentially regulated stress response sigma factors. [Cellular processes, Adaptations to atypical conditions, Transcription, Transcription factors]
Statistics
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PSSM-Id: 274107
Aligned: 18 rows
Threshold Bit Score: 388.947
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
CAE35198      38 GTIDAYISAVNRLPILTAEQEGQLARRLRDEGDLEAARELVVSHLRLVVSVARQYLGYGLPHADLIQEGNVGLMKAVKRF 117 Bordetella bron...
CAD84495      13 GDLDSYIRATSSFPVLSREEEASLAKRMREEGDVNAAHQLVLSHLRVVVTIARGYLGYGLPHADLIQEGNIGLMKAVRRF 92  Nitrosomonas eu...
AAN57543      17 SSLEAYIHSVTSMNMLDAETEYELAKRLQETGDLQAAKQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRF 96  Shewanella onei...
CAD83301      15 GTLEAYIRAANLYPMLTVEEEQKLAKNLYYNGDLNAAKKLIVSHLRFVIHVARNYSGYGLSQADLIQEGNIGLMKSIRRF 94  Candidatus Bloc...
tigr:BR1650   14 GGLTRYLEEIRRFPMLEPQEEYMLAKRYHEHADPKAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKRF 93  Brucella suis 1330
AAC44755      14 AGLSKYLVEIRKFPLLTPEQELAYARRWREHRDRDAAYHLVTSHLRLVAKIAMRYRGYGLPIAEIVSEGNIGLMQAVRRF 93  Bradyrhizobium ...
CAA70861      23 PFLSAYSAAIRRYELLEPGQEQQLARRWHETRDRGAADALVTSHLRLAAKLARGYKGYGLPMVDLIAEANLGLVIAASRF 102 Bradyrhizobium ...
AHG69085      37 GNIDAYIQAVNRIPLLSAEEERQYATEYREQNNLDAARRLVLSHLRLVVSVARNYLGYGLPHGDLIQEGNIGLMKAVKRF 116 Burkholderia ps...
WP_012537367  15 DGLAGYLRFVNAQPLLRPEEERDLARRLRDHGDVDAAKDLVLSHLRFVVRVARGYRGYGLQEADLIQEGNIGLMKAVKRY 94  Acidithiobacill...
WP_010980829  18 GSLEQYIHTVNRIPMLTQEEETRLAER-QHKGDLNAAKQLILSHLRVVVSIARGYDGYGLNQADLIQEGNIGLMKAVKRY 96  Neisseria menin...
CAE35198     118 DPERGVRLVSFAVHWIKAEIHEFIIRNWRLVKVATTKAQRKLFFNLRSMRP---DGQ-T-LDPEQVDHIARELNVRREDV 192 Bordetella bron...
CAD84495      93 DPERGVRLISFAIHWIRAEIHEFIMRNWRLVKIATTKQQRKLFFNLRSMKK---GLD-T-MSQAEVASMAEQLGVKAEEV 167 Nitrosomonas eu...
AAN57543      97 DPDVGVRLVSFAVHWIKAEIHEYVLKNWRIVKVATTKAQRKLFFNIRKAKT---RL--GwFSDDEVTMVAENLGVSKADV 171 Shewanella onei...
CAD83301      95 NPELDVRLVSFAVHWIKSEIHEYVLKNWRIVKIATTKAQRKLFFNLRKTKQ---RL--GwFNEGEIEMVAKTLHVTCKDV 169 Candidatus Bloc...
tigr:BR1650   94 EPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRKMKSkiqALDdGdLNPDQVKQIATKLNVSEDEV 173 Brucella suis 1330
AAC44755      94 DPDRGVRLATYAMWWIRASIQEYILRSWSLVKIAASASQKKLFFKLRRAKSaisALQdGdLRPEQVRLIAERLKVAERDV 173 Bradyrhizobium ...
CAA70861     103 EPGRGARFSTYAIWWIKAAIHEYILRSWSLVKIGTTAAQKKLFFKLRSEIRkatGSVmSgLTPDVAELIAGKLDVTAREV 182 Bradyrhizobium ...
AHG69085     117 DPAQNVRLVSYAIHWIKAEIHEYILRNWRMVKVATTKAQRKLFFNLRSHKK---GTQ-A-FTPEEIDGLAQELNVKREEV 191 Burkholderia ps...
WP_012537367  95 DPDHGVRLVSFAVHWVKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSSRS---HT--GwMSGEESAAMADDLGVTQAQV 169 Acidithiobacill...
WP_010980829  97 EPGRGARLFSFAVHWIKAEIHEFILRNWRLVRVATTKPQRKLFFNLRSMRK---NLN-A-LSPKEAQDIADDLGVKLSEV 171 Neisseria menin...
CAE35198     193 SEMEVRLSGRDLSLESQDDD-DDSf---APIAYLSDEgrqEPSRVLDRMAHDDLQGAGLGRALEALDARSRRIIEARWLQ 268 Bordetella bron...
CAD84495     168 VEMETRFSGRDISLEPVTDSdEDDf---SPIAWLTDGs--DPSRELEKEQLERLTHARLKNSLDSLDERSRRIIEARWLR 242 Nitrosomonas eu...
AAN57543     172 TEMESRMAAQDPAFDLSSDNdDeh--dfAPVHYLEDHs-sDLAENIENDNWESNAQGRLLSAIKTLDERSQHILRARWLD 248 Shewanella onei...
CAD83301     170 REMESRMAAQDMTLEQPYLDeDDKnilsIPMLYLQDKi-tIIDD---EEEWIDQVSNKLNIALNTLDKRSQHIIRARWLN 245 Candidatus Bloc...
tigr:BR1650  174 VSMNRRLSG-DASLNAPLRAsEGEs--gEWQDWLVDDs-nSQEQVLIEQDELESRRSMLEQAMETLNDRERRIFEARRLA 249 Brucella suis 1330
AAC44755     174 VAMDRRLRG-DASLNVPIHD-EDEg--gQTLDWLVDPa-pTCEITLAEEQEAKQRRLALANALANLNARERNIFTARWLN 248 Bradyrhizobium ...
CAA70861     183 IEMDARLNG-DMSLNARVGG-EESg--tELEALLVDGa-vDAETMLADHEQTERRAKALRVALGGLAARERHVFEARRLT 257 Bradyrhizobium ...
AHG69085     192 AEMETRLSGGDIALEGQIDDgEESy---APIAYLADSh-nEPTAVLAARQRDMLQTDGIARALESLDARSRRIIEARWLN 267 Burkholderia ps...
WP_012537367 170 LEMEGRMSGYDYSLNLEPDEeREGg--rAP--DLADPt-gSPIEQLVERDWDQQQHRALHTALSALPQRDRYIIENRWLS 244 Acidithiobacill...
WP_010980829 172 LEMEQRMTGHDIAIMADNSDdEDSf---APIDWLADHd-sEPSRQLSKQAHYALQTEGLQNALAQLDDRSRRIVESRWLQ 247 Neisseria menin...
CAE35198     269 -DDg----GLTLHELAQEFGVSAERVRQIEAAALKKMRGALTP 306 Bordetella bronchiseptica RB50
CAD84495     243 -EDk----AATLHELADELGVSAERVRQIEAKAMKKMRAEIAI 280 Nitrosomonas europaea ATCC 19718
AAN57543     249 -DD-----KTTLQELAETYQVSAERIRQLEKNAMNKLKACMEA 285 Shewanella oneidensis MR-1
CAD83301     246 aDN-----KTTLQELANQYGISAERIRQLEKNAMKKMKLILNN 283 Candidatus Blochmannia floridanus
tigr:BR1650  250 -EE-----PMTLEDLSGEFGISRERVRQIEVRAFEKVQAAVKA 286 Brucella suis 1330
AAC44755     249 -EE-----STTLEELAAEYGVSRERVRQIEERAFQKVKAAMLT 285 Bradyrhizobium japonicum
CAA70861     258 -EC-----PVTLDQLARELSISSERVRQIEIRAFAKVKRAVML 294 Bradyrhizobium japonicum
AHG69085     268 -VDddgsgGSTLHDLAAEFGVSAERIRQIEASAMKKMRTALAA 309 Burkholderia pseudomallei MSHR146
WP_012537367 245 -DD-----PKTLQVLGDELGVSAERVRQLEKSSMGKLRQQMLT 281 Acidithiobacillus ferrooxidans
WP_010980829 248 -DDg----GLTLHQLAAEYGVSAERIRQIEAKAMQKLRGFLTe 285 Neisseria meningitidis
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