3HKZ


Conserved Protein Domain Family
RNA_pol_rpoA2

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TIGR02389: RNA_pol_rpoA2 
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DNA-directed RNA polymerase, subunit A''
This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanocaldococcus jannaschii contains an intein. [Transcription, DNA-dependent RNA polymerase]
Statistics
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PSSM-Id: 274105
Aligned: 9 rows
Threshold Bit Score: 508.054
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3HKZ_C        23 ILPQKIVDDLKNLILnkeIIVTRdEIDkIFDLAIKEYSEGLIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTL 102 Sulfolobus solf...
Q8ZYQ7        14 VLPQPLYKEVEEAVR---DLDDEkALR-LVYRVLKLYVTSLIDPGEAIGIVTAQSIGEPGTQMILRSFHYAGLREFSMAR 89  Pyrobaculum aer...
CAF30920      14 VLPPLLKRELSEKILreeISEEY-LVDeIISETTRAYERTLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTL 92  Methanococcus m...
Q8PUR2        17 PLPSNILKTLRDDVIkagVSKK--EMEeIIERVMEEYTVSCIEPCDAAGVVAAQSIGEPGTQMTMRTFHYAGVAEINVTL 94  Methanosarcina ...
WP_011153412   3 LLPEKILQEFEEMAKkykIRGKK-KEQl-LKKLEEKYLNSLIDPQEPIGIITAQSFGEPATQMLLNAFHFAGVSELQLVT 80  Nanoarchaeum eq...
WP_010900821 139 AMGFTLPESVAEEIArrrTEWGEkAYKnILKRIGEEIGNELIDPYEAVGIIAAQSIGEPGTQMTMRTFHFAGVREMNVTL 218 Thermoplasma ac...
WP_010903995  18 ELPRRLKDEVLATAEergVTKS--QANeIATAVEAQYLDTRVDPLDPVGTVSAQSIGEPGTQMTMNTFHYAGVAEMDVTQ 95  Halobacterium s...
WP_010876678  87 RFPPKLIEDIAEVMKkheLSDD--ELDeLIRRVRRAYDRARVEAGEAVGTVAAQSVGEPGTQMTMRTFHYAGVAELNVTL 164 Methanothermoba...
Q9YAU2        17 ILPESLYKELVETVEkedGLSEEdKIS-VVKETIRTYLRSLAQPGEAVGTVAAQSIGEPGTQMTLRTFHYAGIMEFDVTL 95  Aeropyrum perni...
3HKZ_C       103 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKR----DRDKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKG 178 Sulfolobus solf...
Q8ZYQ7        90 GLPRLIEVVDARRTPSTPLMYVYLKPPYNK----SREAAESVAKKIQQVTLETLAKEVDVDYVAGTVTITLDQEQLKYRG 165 Pyrobaculum aer...
CAF30920      93 GLPRMIEIVDARKEPSTPTMTIYLNDEFKG----NREKAATVAKNIESTNVESVSEDISVDLVNECITIILNNQQLESRG 168 Methanococcus m...
Q8PUR2        95 GLPRLIEIVDARKIPSTPMMTIALSKEHPEdyayDREKTRALAWEIEATKIDHIA-DVTTDLSQMKLIIDLHEKAMEGRN 173 Methanosarcina ...
WP_011153412  81 GLPRLIEILNAKKKPTIPSMTIYLEKNDEK-------LAEELVNKLIEVKLSDIAKSISIDVINKRIIIELDQQLVKEKD 153 Nanoarchaeum eq...
WP_010900821 219 GLPRLIEIVDARRIPSTPSMTIYLRPEYET----NDEVVMDVVKRLENTSISDVA-DIITDIGELTVTVRPDPRKTKDRL 293 Thermoplasma ac...
WP_010903995  96 GLPRLIELVDARKTPDTPVMEVYLEDEYAE----ERERAHEVVWKIEATKILALG-DISTNVADMVVRIDLNEDTLQERW 170 Halobacterium s...
WP_010876678 165 GLPRLIEIVDARKKISTPTMSIYFEGDLRY----DEEFVRRKANKIGKSTLNDVLKNFSIQYADMSVVAELDEEKIQEKH 240 Methanothermoba...
Q9YAU2        96 GLPRLIEIVDAKQTPSQPLMYIYLKDEYAK----DLEKAKEAARKIEYTTLEKIIDNIEWDLGDRVVAIVINAEYMEDKG 171 Aeropyrum perni...
3HKZ_C       179 VTVDDVKKAIGRLKlGDFMIE----ESED------------STLNIN-FANiDSIAa--LFKLRDKILNTKIKGIKGIKR 239 Sulfolobus solf...
Q8ZYQ7       166 LTLKDVEKIVAKAK-GKDVAI----SMRG------------YTITAS-LTTpDILK---IRKIKDKILQIKISGIKGVRK 224 Pyrobaculum aer...
CAF30920     169 LTVPDVIDAIKSKMkLKIE------DHEN-------------VLNLK-IKT-PSLKa--LRKRLPKVRAIHLKGVQNIKR 225 Methanococcus m...
Q8PUR2       174 ITIDRVKEKFNEELnVLVSis---pDIDN------------QIVIT--PGE-PSYRe--LLQLAKSIHNVTLKGIEGIKR 233 Methanosarcina ...
WP_011153412 154 ITKKDLEKAFKSAKlKAKIE--------N------------NTITIE-AGN-KRPKe--LYLLKNKIKDLHIKGVKGIKY 209 Nanoarchaeum eq...
WP_010900821 294 IEMEDIMNAISKIKgITVME-------DS------------GQIIIK-PQQ-ESFKk--LYLLQEQIKGLTIKGISGIKR 350 Thermoplasma ac...
WP_010903995 171 PRVDSTTQIAGEVAeTIEGNLgvtvTQDG------------TILEFG-PSE-PSYRe--LLQLVEQLRDIVFKGIEEVSR 234 Halobacterium s...
WP_010876678 241 LEYDEILAKVEKTFkKVEI------DNN--------------ILRFE-PPK-PTIRe--LRLLADKVRKLQISGVKNIGK 296 Methanothermoba...
Q9YAU2       172 VTVDMVLEALDKSKlGKVVED----GVREvseggvkkvivyFEISDKqLPDeELFNsnaYHKVLEKLKNTYIKGIKGIRK 247 Aeropyrum perni...
3HKZ_C       240 AIVQ----KKGD--EYIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLD-VDIRH 312 Sulfolobus solf...
Q8ZYQ7       225 VVLQy--dSKND--EWYIVTEGTNLEAVLQLEEVDPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLD-VDIRH 299 Pyrobaculum aer...
CAF30920     226 VIIRk----eVD--EYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLT-VDKRH 298 Methanococcus m...
Q8PUR2       234 VVVRk----eGE--EYTLYTEGSALREVLQFEGVDRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLT-VDIRH 306 Methanosarcina ...
WP_011153412 210 AMITr----eND--ELVIKTFGSNLKEVLKMKGIDKTRTTTNDIHEIAKVLGIDAAREAIIEEIQKVLEEQGLE-IDVRY 282 Nanoarchaeum eq...
WP_010900821 351 AIARve--gKEH--RWVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQEQGLN-VDVRH 425 Thermoplasma ac...
WP_010903995 235 VVIRreetERGE--EFVLYTEGSAFKKALKIEGVDATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDdVNIRH 312 Halobacterium s...
WP_010876678 297 VVIRk----eDD--EWVIHTEGSNLGAVLKEEGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLT-VDIRH 369 Methanothermoba...
Q9YAU2       248 VTVRr--eEGEDsyEYMLIVEGSNLREVLMLPEVDHRRSISNDIQEIAQVLGIEAARTAIIEEIKRVLEDSGLD-VDIRH 324 Aeropyrum perni...
3HKZ_C       313 ILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLDAAARGDVEEFKGVVENIIIGHPIKLGTGMVELTMR 391 Sulfolobus solfa...
Q8ZYQ7       300 MYLVADAMTWSGRLRPIGRHGVVGSKESPLARAAFEVTVKTLIEASVRGEDELFKGVVESIIAGKYVPIGTGIVRLLMQ 378 Pyrobaculum aero...
CAF30920     299 LMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSASMRGYVDELGGVVENIIVGKPISMGTGCIDICID 377 Methanococcus ma...
Q8PUR2       307 IMLVADLMTSDGEVKQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTGDVHLISR 385 Methanosarcina m...
WP_011153412 283 LLLIADVMTYYGEVLGFTRHGLMERKPSPLERATFEVPFKNLADAALLGEKDDLRAVIVNVLINQPAPMGTGRIKLVFD 361 Nanoarchaeum equ...
WP_010900821 426 LMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAGVAENIIVGQPITLGTGAVDIIYK 504 Thermoplasma aci...
WP_010903995 313 LMLVADIMTNDGTIESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVGKPVRLGTGDVDLRMG 391 Halobacterium sa...
WP_010876678 370 IMLVADMMTADGSVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVSVVMK 448 Methanothermobac...
Q9YAU2       325 LMLIADLMTWPGYVRQIGRLGVVGEKPSPLARAAFEVTVKQLYEAAVWGEEEEFAGVTENIIAGLPPRVGTGSVLLRMG 403 Aeropyrum pernix K1
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