Conserved Protein Domain Family
rpoC_TIGR

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TIGR02386: rpoC_TIGR 
DNA-directed RNA polymerase, beta' subunit, predominant form
Bacteria have a single DNA-directed RNA polymerase, with required subunits that include alpha, beta, and beta-prime. This model describes the predominant architecture of the beta-prime subunit in most bacteria. This model excludes from among the bacterial mostly sequences from the cyanobacteria, where RpoC is replaced by two tandem genes homologous to it but also encoding an additional domain. [Transcription, DNA-dependent RNA polymerase]
Statistics
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PSSM-Id: 274103
Aligned: 10 rows
Threshold Bit Score: 1885.91
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8F0S3          9 SITIRLASPERIK-EWSYGEVKKPETINYRTLKPEKDGLFCEKIFGTTKDWECYCGKFKSIR--YKGVVCDKCGVEVTHS 85   Leptospira in...
O51349          9 RIKIKIASPDQIR-NWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWECYCGKFKSVR--YKGIICDRCNVEVTHF 85   Borrelia burg...
Q8RHI7          8 KIRIKLASPEKIL-EWSHGEVTKPETINYRTLNPERDGLFCEIIFGPTKDWECSCGKYKRMR--YKGLVCEKCGVEVTRA 84   Fusobacterium...
Q820D6          7 EIRVSMATTEDIR-RWSYGVVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECGCGKYKRSR--YRGVVCERCGVEVTQS 83   Tropheryma wh...
AAS39039        9 YMKIGLASPDKIR-SWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWECHCGKYKRVR--YKGVVCDRCGVEVTRA 85   Bacillus cere...
P47582         19 AIKLSIASNDTIL-NWSEGEVTKAETINYKSLKPEPGGLFDEAIFGPVKDYECACGKFKKIK--YRGVRCDRCGVWVTES 95   Mycoplasma ge...
Q9PQV5          8 SLTISIASPEQIL-NWSKGEITKPETINYKSLKPEPNGLFDESIFGPSKDYECYCGKYRKVK--HKGKICERCHVEITES 84   Ureaplasma pa...
CAE77616        9 AIKIELANPDTIR-SWSHGEVLKPETINYKTLKAEKDGLFDERIFGPTKNYECVCGRYKKANpmNKGKKCEKCGVELTES 87   Mycoplasma my...
WP_010892146   24 KLEIGIASDITIRdKWSCGEIKKPETINYRTFKPEKGGLFCEKIFGPTKDWECCCGKYKKIK--HKGIVCDRCGVEVTLS 101  Chlamydia pne...
WP_012606540   19 AIRIGIASPDKVR-SWSFGEVKKPETINYRTFKPEREGLFCAKIFGPIKDYECLCGKYKRLK--HRGVVCEKCGVEVTQA 95   Acidithiobaci...
Q8F0S3         86 KVRRERMGHIELAAPVSHIWYYRSVP--SRMGLLLDMTVNQLKSVLYFEKYVIIDPADSGRNR----------------- 146  Leptospira in...
O51349         86 KVRRERMGHIELAAPVAHIWYYKYIP--SRIGLLLDITASSLNSILYYEKYVVIEPGDTDLKK----------------- 146  Borrelia burg...
Q8RHI7         85 KVRRERMGHITLASPVSHIWYSKGSP--NKMSLIIGISSKELESVLYFARYIVTSSQESTVEV----------------- 145  Fusobacterium...
Q820D6         84 SVRRERMGHIELAAPVTHIWYFKGVP--SRLGYLLDIAPKDLDKVIYFAAYMVVSLDEEGRKEdlqdlenelrldikqlr 161  Tropheryma wh...
AAS39039       86 KVRRERMGHIELAAPVSHIWYFKGIP--SRMGLVLDMSPRALEEVIYFASYVVTESGDTPLDK----------------- 146  Bacillus cere...
P47582         96 IVRRERMGHIALVSPVAHIWMSKELPspSKISLVLNISYKEVEQVLYFVNYIVLDTGKIKDDKimp-------------- 161  Mycoplasma ge...
Q9PQV5         85 IVRRERMGHIELAAPVAHIWFTKELPspSKISLLLDITYKEVDQVVYFVNYIVLDEGNNVYDGksi-------------- 150  Ureaplasma pa...
CAE77616       88 IVRRERMGHIELEEPVTHIWMLKVAP--YRIAAILDLKAKELEEVVYFVSHIVLEQGNQKhf------------------ 147  Mycoplasma my...
WP_010892146  102 KVRRERMAHIELAVPIVHIWFFKTTP--SRIGNVLGMTASDLERVIYYEEYVVIDPGKTDLTK----------------- 162  Chlamydia pne...
WP_012606540   96 RVRRERMGHIELASPVAHIWFLKSLP--SRMGMILDMPLRDIERVLYFEAYVVVDPGVTALER----------------- 156  Acidithiobaci...
Q8F0S3        147 -------------------------------GELIDEEE----------------------------------------- 154  Leptospira in...
O51349        147 -------------------------------MQLLNEDE----------------------------------------- 154  Borrelia burg...
Q8RHI7        146 -------------------------------GKILTEKE----------------------------------------- 153  Fusobacterium...
Q820D6        162 dacdasiasavselertitelqdaktsasriNKVRSEAEnkmanirreyddkiehler------vwdsfkalkvgglyae 235  Tropheryma wh...
AAS39039      147 -------------------------------KQLLSEKE----------------------------------------- 154  Bacillus cere...
P47582        162 ----------------------------fkfKEVLDLTGkgslstrqkmrrvigyif---------rnlikskssedyrk 204  Mycoplasma ge...
Q9PQV5        151 ----------------------------fnkKEVLDLTSpknsirsrnklrrtlrniqeriedelnherealiqdfdyrl 202  Ureaplasma pa...
CAE77616      148 -----------------------------veKEVLDLGSsritktreklqltildv----------idlindpnhrdtkk 188  Mycoplasma my...
WP_010892146  163 -------------------------------KQLLNDAQ----------------------------------------- 170  Chlamydia pne...
WP_012606540  157 -------------------------------GNILTEDQ----------------------------------------- 164  Acidithiobaci...
Q8F0S3        155 ---YHGYLDEYG---------------DKFVAGIGADAIKELLARIDVDAEARMIRQKIQDKD----KISD-KRILKRLE 211  Leptospira in...
O51349        155 ---YIEARERYG---------------MSFNASMGAEAIKTLLENLDLDELSSKLRIQMIDKD----DKTD-KKLLRRLE 211  Borrelia burg...
Q8RHI7        154 ---YKLLKQLYG---------------NKFEAYMGADGILKLLTAIDLEKLRDELENELAEAN----SAQKrKKLVKRLK 211  Fusobacterium...
Q820D6        236 ddvFRDVQDRYG---------------DYFDACMGAEAIKRRLEDFDLQKTAQELGVQIVECR----GQRK-VRAIKRLR 295  Tropheryma wh...
AAS39039      155 ---YRAYRDRYG---------------STFQAAMGAEAIKKLLQDIDLDKEVDFLKEELKTAQ----GQRR-TRAIKRLE 211  Bacillus cere...
P47582        205 gkiFYESLKNSSlpfslndafnyikkyTGFRVGIGAEAILELLNKIDLNLEFSRLNDALRKAKkdsvEDAKvKKILRQLE 284  Mycoplasma ge...
Q9PQV5        203 avtYDQMLKDSNipfsvkdvmafiekhTGVRFGIGAEAIRELLEKLNLEEEHEKIKQAIQNSPn--aYDQKtKRLLRRLE 280  Ureaplasma pa...
CAE77616      189 anrLLEELKNTAvpfsideatsliskyTGAKFGIGARAVEYLLEKVDLTKEIEAIKIQLENSKk---TPNErTKLLKRLE 265  Mycoplasma my...
WP_010892146  171 ---YREVVEKWGk--------------DAFVAKMGGEAIYDLLKSEDLQSLLKDLKERLRKTK----SQQArMKLAKRLK 229  Chlamydia pne...
WP_012606540  165 ---YLDALEEHG---------------DEFAAKMGAEGIRDLLRGIPLTQEIEQIRNELRESN----SDTKtKKLSKRLK 222  Acidithiobaci...
Q8F0S3        212 VLEAFRDSGNRPEWMVLDIVPVIPPELRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLAL-KAPEIIVRNEKRMLQE 290  Leptospira in...
O51349        212 IIENFKISGNKPEWMIMEVLPVIPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLL-NAPEIIVRNEKRMLQE 290  Borrelia burg...
Q8RHI7        212 IVRDFIASGNRPEWMILTNVPVIPAELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLEI-RAPEIVVKNEKRMLQE 290  Fusobacterium...
Q820D6        296 VVNSFITSKANPACMVLDVIPVIPPELRPMVQLDAGRFAASDLNDLYRRVINRNNRLKRLLDL-GAPRIIVNNEKRMLQE 374  Tropheryma wh...
AAS39039      212 VLEAFRNSGNEPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL-GAPSIIVQNEKRMLQE 290  Bacillus cere...
P47582        285 TISWFRNSKLHPKNMILHTVPVIPPDIRPIIQLDGAKFTTSDINNFYRRVIIRNDRLRRILEDgTVPSIVVNNEKRLLQE 364  Mycoplasma ge...
Q9PQV5        281 CVRWIKDSGSKPEWMVMTRIPVTPSETRPIISLDGGRFTTSDTNNFYRKIIIRNERLKQMQAT-DAPEILLDNEKRLLQE 359  Ureaplasma pa...
CAE77616      266 TFDSLKRSKQRPEWMVMRVIPVIPPDIRPIIQLDGGRFTTSEINDLYRRIIIRNERLKKVKEM-GAPSIIVNNEKRMLQE 344  Mycoplasma my...
WP_010892146  230 IIEGFVSSSNHPEWMVLKNIPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRL-KTPEVIVRNEKRMLQE 308  Chlamydia pne...
WP_012606540  223 ILEAFEQSGNRPEWMIMEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLEL-KAPDIIVRNEKRMLQE 301  Acidithiobaci...
Q8F0S3        291 AVDALFDNSRRKRAVKGKGNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKYHEMGLPKKMALELFKPFI 370  Leptospira in...
O51349        291 SVDSLFDNSHKRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAKMALELFKPFV 370  Borrelia burg...
Q8RHI7        291 AVDALIDNGRRGKPVVAQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSARSVIVVGPSLKMNQCGIPKKMALELYKPFI 370  Fusobacterium...
Q820D6        375 AVDALFDNGRRGRPVSGTNNRTLKSLSDMLKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKLMALELFKPFI 454  Tropheryma wh...
AAS39039      291 AVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFV 370  Bacillus cere...
P47582        365 SVDALFDNSSRHKPSLSKDKRSLKSLTDRLKGKQGLFRHNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFKPFI 444  Mycoplasma ge...
Q9PQV5        360 AVDSLFDNNSRKKPVVGKDKRPLKSLSNHLKGKQGLFRQNLLGKRVDYSGRSVIVVGPELKMYEVGIPALMILKLFRPYI 439  Ureaplasma pa...
CAE77616      345 AVDALFDNERKPKPVQRKNKRPLKSLTSVLKGKQGRFRQNLLGKRVDYSARSVIAIGPDLKMYQAGLPREMAITLFKPFV 424  Mycoplasma my...
WP_010892146  309 AVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIVGPELKFNQCGLPKEMALELFEPFI 388  Chlamydia pne...
WP_012606540  302 AVDALLDNGRRGRAISGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRLHQCGLPKKMALELFKPFI 381  Acidithiobaci...
Q8F0S3        371 MKRLVD---------LDLAPNIKSAKKKVEAEDKEVFDVLEYVVKEHPVMLNRAPTLHRLGIQAFLPVLVEGKAIKLHPL 441  Leptospira in...
O51349        371 IRRLIE---------SEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHRLGIQAFEPVLVEGKAIKLHPL 441  Borrelia burg...
Q8RHI7        371 MRELVR---------RELANNIKMAKKLVEESDDKVWAVIEDVIADHPVLLNRAPTLHRLSIQAFQPVLIEGKAIRLHPL 441  Fusobacterium...
Q820D6        455 VKRLLD---------LALAPNIRSARRMIERGDPAVWDMLDAVIKARPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPL 525  Tropheryma wh...
AAS39039      371 MKELVE---------KGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPL 441  Bacillus cere...
P47582        445 IHGLINkfdengneiRPIAASIRQAEDMIKNQDDLIWGIVYDVIKDRPVLLNRAPTLHRLGIQAFEPRIVDGKAIRLHPL 524  Mycoplasma ge...
Q9PQV5        440 ISELIRkrdelgneiQPICANIKLAEQKILAQDNEIWPVVEKVIKQRPVILNRAPTLHRLGIQAFEPKMVDGKAIRLHPL 519  Ureaplasma pa...
CAE77616      425 IQWLQD---------HEYAENVKIAEKMLLQNDPKVWEALEQVIKDRPVLLNRAPTLHRLGIQAFEPKLVKGKAIRLHPL 495  Mycoplasma my...
WP_010892146  389 IKRLKD---------QGSVYTIRSAKKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRIHPL 459  Chlamydia pne...
WP_012606540  382 FNKLEE---------RGLATTIKAAKRLVEQEKPEVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL 452  Acidithiobaci...
Q8F0S3        442 VCHAFNADFDGDQMAIHVPLTPKAQLETWMLMLSPHNILNPANGHPICGPTQDIVLGIYYLTSEL---PSEPGVPl---- 514  Leptospira in...
O51349        442 VCHAYNADFDGDQMAVHVPLTPAAQAESWALMLSTNNLLNPANGHPIVFPSQDIVLGLYYLTMEK---KNVVGEGk---- 514  Borrelia burg...
Q8RHI7        442 VCSAFNADFDGDQMAVHLTLSPESMMEAKLLMFAPNNIISPSSGEPIAVPSQDMVMGCFYMTKER---PGEKGEG----- 513  Fusobacterium...
Q820D6        526 VCAAFNADFDGDQMAVHLPLSLEAQAEARVLMLASNNILNPSDGRPVTLPSHDMIIGLYHLTTVK---PSAKGAG----- 597  Tropheryma wh...
AAS39039      442 VCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLER---EGAIGEG----- 513  Bacillus cere...
P47582        525 VTTAFNADFDGDQMAVHVPLSENAVNEARAVLLASKHILGLKDGRPIVTPTQDMVLGNYYLTTER---KGQLGEG----- 596  Mycoplasma ge...
Q9PQV5        520 VTTAFNADFDGDQMAVHIPLSKEAVAEARSILLASWHILGPKDGKPIITPTQDMILGIYYLTKEK---FPQVIEEmmakd 596  Ureaplasma pa...
CAE77616      496 VTTAFNADFDGDQMAVHVPITKEAVAESRALMLGSSAILGPKDGKAIVTPGQDIILGNYYLTTEE---KNAKGQG----- 567  Mycoplasma my...
WP_010892146  460 VCAAFNADFDGDQMAVHVPLSVEAQLEAKVLMMAPDNIFLPSSGKPVAIPSKDMTLGLYYLMADPtyfPEEHGGKt---- 535  Chlamydia pne...
WP_012606540  453 VCAAYNADFDGDQMAVHVPLSLEAQLEARTLMMSTNNILSPANGEPVIVPSQDIVLGLYYVSQE----RADAKGTg---- 524  Acidithiobaci...
Q8F0S3        515 ------------KsFSNLEEVHYAIDRG----------------VVEFRTKISVYHQ--------------GKILETTPG 552  Leptospira in...
O51349        515 ------------K-FLNFNNVILAINNR----------------SLDYNASIYVKIH--------------GEYKKTTAG 551  Borrelia burg...
Q8RHI7        514 ------------KlFSNIEQVITAYQND----------------KVGTHALIKVRMN--------------GELIETTPG 551  Fusobacterium...
Q820D6        598 ------------RaFSSVAEAIMAKDRG----------------DLSISAPVKILFSnivld----gktldSAVVETTLG 645  Tropheryma wh...
AAS39039      514 ------------MvFKDANEALLAYQNG----------------YVHLHTRVAVAASavnnat--fteeqkSMLLLTTVG 563  Bacillus cere...
P47582        597 ------------IiFSTVYEARAAYESQ----------------KVHLHAIVGISTKafpnk-----kfacqGTLITTVG 643  Mycoplasma ge...
Q9PQV5        597 ptqarvefinnfHiFSTQDEAIRAYKLK----------------TIRINDVIGITTKafnnk-----tfskeGILVTTVG 655  Ureaplasma pa...
CAE77616      568 ------------MiFSSLDEAFMAYDSG----------------QIHLNSLIGIALSalpeqkfsdknqrlNSYLLTTVG 619  Mycoplasma my...
WP_010892146  536 ------------KiFKDEIEVLRALNNGgfiddvfgdrrdetgrGIHIHEKIKVRID--------------GQIIETTPG 589  Chlamydia pne...
WP_012606540  525 ------------GvFADAAEVRRAYETG----------------NLGLHARITVRFR--------------GERIDTTAG 562  Acidithiobaci...
Q8F0S3        553 RLIFNTILPEGYAYVNRP---------------------------------LSDKETNRIIADVYDKYGPAKTVLMLDDI 599  Leptospira in...
O51349        552 RVIFNEALPKGIEFVNKT---------------------------------LSDLELQILISKVYVVHGSSIVIEMLDII 598  Borrelia burg...
Q8RHI7        552 RVLFNEILPEIDRNYHKT---------------------------------YGKKEIKSLIKSLYEAHGFTETAELINRV 598  Fusobacterium...
Q820D6        646 RAIFNEALPDGHPYINEL---------------------------------VDKQVISSIINNLAEVYSKVEVANTLDKI 692  Tropheryma wh...
AAS39039      564 KLIFNEILPESFPYINEPtnsnleketpakyfvekganikeiiasreevapFSKKILGNIIAEVFKRFKITETSRMLDRM 643  Bacillus cere...
P47582        644 KIIFNDVLGNNVPYINDGefdenacpekfivkqg--edvrqsilkhqiipaFSKKVISKLIDLLYLLLEFKDLPKTLDNI 721  Mycoplasma ge...
Q9PQV5        656 KIIFNQAFPVNFPYINDVknlygenqfeiigmh---esildylkaynlkepLTKKTLSTVIDYLYKVSEIEVVPQTMDKI 732  Ureaplasma pa...
CAE77616      620 KLYFNQIFDDNFPWINSNniwnakeavkefiyyf-sqdinnvieniqvqqpIKKKELSLIIERYFETHGARKTAEMLDKM 698  Mycoplasma my...
WP_010892146  590 RVLFNRIVPKELGFQNYS---------------------------------MPSKRISELILQCYKKVGLEATVRFLDDL 636  Chlamydia pne...
WP_012606540  563 RALLGDILPEGLPFSVINr-------------------------------vLKKKVIGELINTCYRRLGIKDTVIFADQL 611  Acidithiobaci...
Q8F0S3        600 KKLGYRYATLFAPTISIEDIRVSPGKVGLVGDANKEVEKADSEYRKGIITNEERRKKVIEIWTKTNDLITESMFKELEKD 679  Leptospira in...
O51349        599 KELGFRYATKFGCTISMSDIIVPDEKRTYVERANKEIAKIQNDYAKGVITGEERYNNVVSVWLKTNEELTNKMMEILKKD 678  Borrelia burg...
Q8RHI7        599 KNFGYHYGTFAGVSVGIEDLEVPPKKKSLLNQADKEVAQIDKDYKSGKIINEERYRKTIEVWSRTTEAVTDAMMKNLD-- 676  Fusobacterium...
Q820D6        693 KSVGFHWATRSGVTVAISDVVSPPEKQEIISKYEAQARGVQQDFEIGLLTDLERRQALVSIWSEATDRVAEAMRKCFPDD 772  Tropheryma wh...
AAS39039      644 KNLGFKYSTKAGITVGVSDILVLGEKDEILHEAQAKVDNVIKQFRRGLITEEERYDRVISIWSNAKDVIQGKLMKSLNKR 723  Bacillus cere...
P47582        722 KALGFKYSTFSSTTVSVFDIPKYTNKQNYFDSADQQVLKYKQFYNKGLLTDDERYKRVVKLWNNVKEKVSDEIQNLIKQE 801  Mycoplasma ge...
Q9PQV5        733 KALGFKYSMISATSISAFDIPSYDQKYEYFKETDELVSKLREFYLDGKLTDDERYTKVVQAWSQTKDKVTHDIEKLINSN 812  Ureaplasma pa...
CAE77616      699 KDLGFSFSTKSGTTISAGDVVAFTHKYDEFKEADQKVEQITDFYNMGMLTNSEKKRRIIEVWSDVKDKIQDELATVLRKD 778  Mycoplasma my...
WP_010892146  637 KDLGFIQATKAAISMGLKDVRIPDIKSHILKDAYDKVAIVKKQYDDGIITEGERHSKTISIWTEVSEQLSDALYVEISKQ 716  Chlamydia pne...
WP_012606540  612 MYTGFRMATRAGISFGAGDMVTPLEKEGILARSEDEVKAIQAQYTSGLVTEGERYNKVVDIWSRATDEVAKAMMDRVSKD 691  Acidithiobaci...
Q8F0S3        680 KG-----------GFNPVFIMAASGARGSKQQIRQLAGMRGLMAKPSG-----------EIIELAIRSNFREGLSVLEFF 737  Leptospira in...
O51349        679 RD-----------GFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSG-----------DIIELPIISNFKEGLSVIEFF 736  Borrelia burg...
Q8RHI7        677 -------------EFNPVYMMATSGARGNVSQMRQLAGMRGNMADTQG-----------RTIEVPIKANFREGLTVLEFF 732  Fusobacterium...
Q820D6        773 ---------------NTINTMVTSGARGNWLQVRNIAGMRGLVANPKG-----------ETIPRPIISSYREGLSVTEYF 826  Tropheryma wh...
AAS39039      724 ---------------NPIFMMSDSGARGNASNFTQLAGMRGLMANPSG-----------RIIELPIKSSFREGLTVLEYF 777  Bacillus cere...
P47582        802 QY-----------RDNSIVVMADSGARGNISNFTQLFGMRGLMSKSFNyernnqskiikDTIEVPIKHSFFEGLTINEYF 870  Mycoplasma ge...
Q9PQV5        813 EY-----------KDNPIVIMAKSGARGNTSNFTQLAGMRGLMSKSYNydqknnngvikDTIEIPIKHSFIEGLSVSEYF 881  Ureaplasma pa...
CAE77616      779 -------------VKNPIFVMVDSGARGNISNFTQLVGMRGLMNDTKg-----------DIKEIPIKSSFREGLTVSEYF 834  Mycoplasma my...
WP_010892146  717 TRs----------KHNPLFLMIDSGARGNKSQLKQLGALRGLMAKPNG-----------AIIESPITSNFREGLTVLEYS 775  Chlamydia pne...
WP_012606540  692 TVylpdgssvqqdSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDG-----------SIIETPITANFREGLNVLQYF 760  Acidithiobaci...
Q8F0S3        738 ISTHGARKGLADTALKTADAGYLTRRLVDISQDVIISEDDCGTEESISLGVVKEGE----NVIVSLNDRVFGRYTAEDVI 813  Leptospira in...
O51349        737 ISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTINGIKVETVKNGE----EILESLKEKAVGSYSIERIK 812  Borrelia burg...
Q8RHI7        733 MSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNEEDCHTHEGIEVEALVGANg---KIIEKLSERINGRVLAEDLV 809  Fusobacterium...
Q820D6        827 ISTHGARKGLVDTALKTADSGYLTRRLVDVAQDVVVRERDCGFTRGVRMPVTFRGDdgelHKVENAEHSVYGRTLAEDVK 906  Tropheryma wh...
AAS39039      778 ISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLLIGAIKEGN----EVIESLYDRLVGRFARKTVK 853  Bacillus cere...
P47582        871 NSSYGARKGMTDTAMKTAKSGYMTRKLVDATHELIINHDDCGTRKGIVVEAIVETKt--kSLIESLFDRIVNRYSITPIV 948  Mycoplasma ge...
Q9PQV5        882 NSSFGARKGMTDTAMKTAKSGYMTRKLVDSTQAVVIKDHDCGTKEGIIVREIRNTKd--nTSIESLKDRIVGRYSINTIY 959  Ureaplasma pa...
CAE77616      835 VSTHGARKGMADIALKTADSGYLTRRLVDVSQEIVVVNEDCEPSKGFEVSAIIDTKh--dNVIVPLKDRLVGRFTFEDIY 912  Mycoplasma my...
WP_010892146  776 ISSHGARKGLADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEISAIGQGS----EELLPLKDRIYGRTVAEDVY 851  Chlamydia pne...
WP_012606540  761 ISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVVETDCGSEEGLPMTSLVEGG----EIIEPLRDRVLGRVVAEDVV 836  Acidithiobaci...
Q8F0S3        814 DP-VTDQVVYPRNTLITREVGQKVENLGYDKIRVRSPLTCESKQGVCIRCYGMDMARLIPAEIGEAVGTIAAQSIGQPGT 892  Leptospira in...
O51349        813 NP-ITGEIVLDANEEISEAKIELLEKIGIEKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGT 891  Borrelia burg...
Q8RHI7        810 H---KGKKIAKRNTMIHKDLLDKIEELGIKKVKIRSPLTCALEKGVCQKCYGMDLSNYNEILLGEAVGVVAAQSIGEPGT 886  Fusobacterium...
Q820D6        907 TP--DDNLIAKAGEDISGIMIDSFIAAGVESVEVRSVLTCRSKVGVCSACYGRSLATGARVDIGDAVGIVAAQSIGEPGT 984  Tropheryma wh...
AAS39039      854 HP-ETGEVLVAENQLITEDIAHIVENSGVETVNIRSAFTCNTRHGVCKKCYGRNLATGTDVEVGEAVGIIAAQSIGEPGT 932  Bacillus cere...
P47582        949 DP-ETQKTIVEANSLITTQLAKQICATSIKEVLVRSVIYCERENGICQYCFGIDLSTGKLVELGTAVGVIAAQSIGEPGT 1027 Mycoplasma ge...
Q9PQV5        960 DT-KN-KLIIESDKLITSEIANIIQNSGIREVEVRSPLHCASLYGVCQKCFGLDLSTNKLIETGTAIGVIAAQSIGEPGT 1037 Ureaplasma pa...
CAE77616      913 DD-DK-NLVAFANTLIDKNIAEKIIMSGISSVVIRSVLTCDNKRGVCQKCYGLNLATASVVNIGEPVGVIAAQSIGEPGT 990  Mycoplasma my...
WP_010892146  852 QPgDKSRLLAQSGDVLNSVQAEAIDDAGIETIKIRSTLTCESPRGVCAKCYGLNLANGRLIGMGEAVGIIAAQSIGEPGT 931  Chlamydia pne...
WP_012606540  837 HP-NTGEIVIPRNTLLTERHLSQLDELGVDALKVRSPLTCRSRHGVCALCYGRDLARGHLVNAGEAVGVIAAQSIGEPGT 915  Acidithiobaci...
Q8F0S3        893 QLTMRTFHIGGAASAKvqekehkvsytgivnningrlitneksqsvfsrrgsiviqrliqqykteelsnlrvengqkvdk 972  Leptospira in...
O51349        892 QLTMRTFHIGGVAQAGseddkislknafilngiegfnvrvdngilftrkgtlkiinvfyeekiknikeikvldsqrvikg 971  Borrelia burg...
Q8RHI7        887 QLTMRTFHTGGVAGAAtvvnskkaendgevsfrdiktieingedvvvsqggkiiiadnehevdsgsvirvtegqkvkegd 966  Fusobacterium...
Q820D6        985 QLTMRTFHSGGSASA----------------------------------------------------------------- 999  Tropheryma wh...
AAS39039      933 QLTMRTFHTGGVAGD----------------------------------------------------------------- 947  Bacillus cere...
P47582       1028 QLTMRTFHTGGVSTEN---------------------------------------------------------------- 1043 Mycoplasma ge...
Q9PQV5       1038 QLTMRTFHTGGVAGDT---------------------------------------------------------------- 1053 Ureaplasma pa...
CAE77616      991 QLTMRNFHTGGVAGNV---------------------------------------------------------------- 1006 Mycoplasma my...
WP_010892146  932 QLTMRTFHLGGIAATSstpeiitnsdgilvymdlrvvlgqeghnlvlnkkgalhvvgdegrtlneykkllstksieslev 1011 Chlamydia pne...
WP_012606540  916 QLTMRTFHIGGAASRSaaqssidikqggvfryqpnlrlvthssgrhvvvgrngevtvtdeqgrekerykvpygatilvdd 995  Acidithiobaci...
Q8F0S3        973 gelvatspagenitsempgtihienglfrilge-eavipvktgtivnvkvnditqpnqplaefdpynevgiseidgtvqw 1051 Leptospira in...
O51349        972 iplfidkkgseilssyigyvklrddnffivseeqevslkagtkleievgdyvesgkvigtfdpfaepiiaevkgkikfkd 1051 Borrelia burg...
Q8RHI7        967 vlvt-----------------------------------------------------------fdpyhipiisshdgkvq 987  Fusobacterium...
Q820D6            --------------------------------------------------------------------------------      Tropheryma wh...
AAS39039          --------------------------------------------------------------------------------      Bacillus cere...
P47582            --------------------------------------------------------------------------------      Mycoplasma ge...
Q9PQV5            --------------------------------------------------------------------------------      Ureaplasma pa...
CAE77616          --------------------------------------------------------------------------------      Mycoplasma my...
WP_010892146 1012 fpvelgvkilvadgtpv----------------------------------sqgqriaevelhnipiicdkpgfikyedl 1057 Chlamydia pne...
WP_012606540  996 naavtagrrvaewdph-----------------------------------trpivsevggkislkdavegasvaiqtde 1040 Acidithiobaci...
Q8F0S3       1052 mdleigknvrrdedlrtsnillkvieqrreklnpriavisggsreeysvpvDaiisvqdgdkvkagdilfkiptvaektr 1131 Leptospira in...
O51349       1052 iilgttlkeeintetgnvekritdnvfesldprifiidssgmevasyvlpgDaylqvedgqsinigdiiaklskgsektq 1131 Borrelia burg...
Q8RHI7        988 yrhftpknirdekydvheylvvrsvdsvdseprvhildkkneklatynipyGaymmvrdgakvkkgdiiakiiklgegtk 1067 Fusobacterium...
Q820D6       1000 ---------------------------------------------------V---------------------------- 1000 Tropheryma wh...
AAS39039          --------------------------------------------------------------------------------      Bacillus cere...
P47582            --------------------------------------------------------------------------------      Mycoplasma ge...
Q9PQV5            --------------------------------------------------------------------------------      Ureaplasma pa...
CAE77616          --------------------------------------------------------------------------------      Mycoplasma my...
WP_010892146 1058 vegistekvvnkntglvelivkqhrgelhpqiaiyddadlselvgtyaipsGaiisveegqrvdpgmllarlprgaiktk 1137 Chlamydia pne...
WP_012606540 1041 itglstlvvidakqrppqgrdlrpvislldehgqdlklpgtdlparyflpaKaiiavhegmeihpgdilarlpvgttktr 1120 Acidithiobaci...
Q8F0S3       1132 DITGGLPRVDELFEARRPKD--ATTLAETDGKIEISg-EIVKEKRVLYIHPDNPdlEKVKVTIPIGKQIRVRNGDFVKRG 1208 Leptospira in...
O51349       1132 DITGGLPRVNDLFETRIPKN--LTEMAKVSGIVQFK--SIQKGKRLINILDEYG--VEHKHYIPAGKHLLVRDGDVVKAG 1205 Borrelia burg...
Q8RHI7       1068 DITGGLPRVQELFEARNPKG--KATLAEIDGRIEILt-TKKKQMRVVNVRSLENpeEFKEYLIPMGERLVVTDGLKIKAG 1144 Fusobacterium...
Q820D6       1001 DITQGLPRVQELFEARTPRA--AAPIAEADGTVSIE--DGDRARRLILKSDNN---EEFSYTVLKRAQLRVKDGSRVSLG 1073 Tropheryma wh...
AAS39039      948 DITQGLPRIQEIFEARNPKG--QAVISEIDGVIAAI--NDVKDRQEVVVQGEV---ETRTYAIPYGARLKVIPGQQISHG 1020 Bacillus cere...
P47582       1044 NLAQGFERLKQIFEVVTPKDfeKAVISEVKGTVKSIt--TVQNAQEVVIKSNVD--ERI-YTIPFSAQIRVHVGDQVSPG 1118 Mycoplasma ge...
Q9PQV5       1054 NITQGFERIKQLFDCIQPQEneKAVISQVKGTVERIekDSNTNGYNVVIKYNKD--NYVNYPTRSNAVLRVKTGDEIIAG 1131 Ureaplasma pa...
CAE77616     1007 DITQGLPRIKELLDVTTPKGa-VAIISEVDGVVSEIe--DYNGVFVINIVTENE--EVKKYKTEFNSVLRVEQGSSVVAG 1081 Mycoplasma my...
WP_010892146 1138 DITGGLPRVAELVEARKPED--AADIAKIDGVVDFK--GIQKNKRILVVCDEMTg-MEEEHLIPLTKHLIVQRGDSVIKG 1212 Chlamydia pne...
WP_012606540 1121 DITGGLPRVAELFEARRPKD--FAVIAEHEGIIGFG--KDTKGKQRLIITDESg--EQHEYLIPKGRHVTVYEGERVSPG 1194 Acidithiobaci...
Q8F0S3       1209 DQIDDGNLDPHDILRVKGVTALQVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNE 1288 Leptospira in...
O51349       1206 DMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMKKVKIVAVGDTNFVYGQKVDKHTFYE 1285 Borrelia burg...
Q8RHI7       1145 DKITEGAISPYDVLNIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSGASLFLEDEVIEKRVVDL 1224 Fusobacterium...
Q820D6       1074 DQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHIEVIVRQMLRKVTVVDHGDTSMLPGELIDQSRYQE 1153 Tropheryma wh...
AAS39039     1021 KELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVSDAGETDVLPGTLLDIHQFTD 1100 Bacillus cere...
P47582       1119 SKITEGSVDIKQLLRIAGIQRVRQYMIVEIQKVYRIQGIDIADKYVEIIIRQLTNLLQVTDAGNSNLFVGQLVHSHYLNE 1198 Mycoplasma ge...
Q9PQV5       1132 QKITEGSIDVNDLLKYAGIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLTNKITITNPGDSGLFVGETISINEFTE 1211 Ureaplasma pa...
CAE77616     1082 QKLTEGAIDLHQLLEFGGIQDVQNYILKEVQKVYRLQGIEISDKYIEIIIKQMLNKVKITDGGDSDLLPGEVITIQNYKE 1161 Mycoplasma my...
WP_010892146 1213 QQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPGDTTLLFGEDVNKKEFYE 1292 Chlamydia pne...
WP_012606540 1195 EQLVEGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRRVEVTSSGDSTFIPGDQVDRARVED 1274 Acidithiobaci...
Q8F0S3       1289 ENKRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKENVIIGHMIPAGTGTKKYK 1368 Leptospira in...
O51349       1286 QNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISAASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYK 1365 Borrelia burg...
Q8RHI7       1225 ENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIPAGTGFNKYK 1304 Fusobacterium...
Q820D6       1154 LNREAQAEGRKTASARQEVTGITKASLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIGNLIPAGTGLSVYR 1233 Tropheryma wh...
AAS39039     1101 ANAKVLLQGKQPATARPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMNRYR 1180 Bacillus cere...
P47582       1199 LNKSLLLAGKMPVIAINQVFGIDEAASKSNSFLSAASFQDTKKILTDAAVKNQVDYLLGLKENVIIGGKIPAGTGFLTDE 1278 Mycoplasma ge...
Q9PQV5       1212 VAQNMLVNKKKPPSAINQVFGLDHAPSKSGSFLSAASFQDTKKILTDAAARSQKDMLIGLKENVILGNLIPAGTGLKDVE 1291 Ureaplasma pa...
CAE77616     1162 VVQDCIVKSIRPPLSKAQIFGIKKAPLESSSWLSSASFQDTARVLTRAIIKGKEDKLEGLKENIMLGNLIPAGTGLTGTQ 1241 Mycoplasma my...
WP_010892146 1293 ENRRTEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACCSKTDYLLGFKENVIMGHMIPGGTGFETHK 1372 Chlamydia pne...
WP_012606540 1275 ENIALEAAGKELPRFTPMLLGITKASLSTESFISAASFQETTRVLTEAAVSGKVDDLRGLKENVIVGRLIPAGTGLAYHE 1354 Acidithiobaci...
Q8F0S3       1369 D 1369 Leptospira interrogans serovar Lai str. 56601
O51349       1366 K 1366 Borrelia burgdorferi B31
Q8RHI7       1305 S 1305 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Q820D6       1234 D 1234 Tropheryma whipplei str. Twist
AAS39039     1181 K 1181 Bacillus cereus ATCC 10987
P47582       1279 E 1279 Mycoplasma genitalium G37
Q9PQV5       1292 E 1292 Ureaplasma parvum serovar 3 str. ATCC 700970
CAE77616     1242 E 1242 Mycoplasma mycoides subsp. mycoides SC str. PG1
WP_010892146 1373 R 1373 Chlamydia pneumoniae
WP_012606540 1355 H 1355 Acidithiobacillus ferrooxidans
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