2JO6


Conserved Protein Domain Family
nirD_assim_sml

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TIGR02378: nirD_assim_sml 
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nitrite reductase [NAD(P)H], small subunit
This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. [Central intermediary metabolism, Nitrogen metabolism]
Statistics
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PSSM-Id: 131431
View PSSM: TIGR02378
Aligned: 12 rows
Threshold Bit Score: 139.759
Threshold Setting Gi: 1171662
Created: 8-Oct-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2JO6_A            6 QWKDICKIDDILPE----TGVCALLGDEQVAIFRPYHsDq-VFAISNIDPFFESSVLSRGLIAEHQ-GELWVASPLKKQR 79   Escherichia...
AAF28060        908 SWRSVCPSTELPEKea-gSSTTILISDTQIALFRLNG-K--LYASQNMCGHKRAFVLSQGIISTDEnDNVYISCPLHKRN 983  Wickerhamom...
CAB60008        939 TWVTVAQKGDMALSelgtTSVAVKYGDTQLAVYHVPK-Rg-FYATQQMCPHRRAFVLDHGIIGDTPsGELYVSCPLHKRN 1016 Hebeloma cy...
AAQ21361          7 NWTAVCAVDDILPN----TGVCALIDDRHVAIFRVGQ-Se-FFAIDNVDPKSNASINARGLLGNLG-DRTVVASPMYKHH 79   uncultured ...
P23675            3 QWKDICKIDDILPE----TGVCALLGDEQVAIFRPYH-SdqVFAISNIDPFFESSVLSRGLIAEHQ-GELWVASPLKKQR 76   Escherichia...
CAC19473          8 TWTAVCAAEVVPEY----SGVAALLDGVQVAIFRLPG-Dr-WYALSNWDPCSGAAVLSRGIVGDAD-GVPVVASPVYKER 80   Amycolatops...
Q06458          844 PWQAICDLDAIPQQ----AGIGARLGERQIALFRF-G-Dq-VYALDNLEPGSEANVLSRGLLGDAG-GEPIVISPLYKQR 915  Klebsiella ...
CMCP6:VV2_0389    3 TKQFICHLNELKSD----HGHPVLLDDEQLAMFYVPK-Eg-VFAIQNWDPIGKAFVLSRGIVGDIQ-GELCVASPLYKQH 75   Vibrio vuln...
AAP30019          2 NWLDICALEEINIL----GSRIINGPKGDIAIFRTSD-De-VFALDDRCPHK-GGPLSQGLVYGKR-----VACPLHNWQ 69   Pseudomonas...
P42436            7 TKVCIGKIEELPEQ----LGKTVYIEDKELAVFKLSD-Gs-IRAIENRCPHK-GGVLAEGIVSGQY-----VFCPMHDWK 74   Bacillus su...
KDR88110          4 NWIDIGDISDIPLR----GARCVKTPMGKIAVFRTAE-Nq-VFAIEDHCPHK-GGPLSQGIVHGAS-----VTCPLHNWV 71   Agrobacteri...
CAD28426        931 SWQPVIEANYFSDEhpqiSSANIKRGDTQLAIFKVKG-K--YYATQQMCPHKRAFVLSDGLIGDDDaGKYWVSCPYHKRN 1007 Aspergillus...
2JO6_A           80 FRLS-----DGLCMEDEQFSVKHYEARV-KDGVVQLRG 111  Escherichia coli
AAF28060        984 YVIDadkpnAGACKNDDSLSVALFDIKE-EDGMILVKL 1020 Wickerhamomyces anomalus
CAB60008       1017 FTLT-----DGTCLSDPDYEILAFEARAnDADDIEVLL 1049 Hebeloma cylindrosporum
AAQ21361         80 FDLR-----SGECIETPEYSVRAHEVRI-EDGRVLVAV 111  uncultured bacterium
P23675           77 FRLS-----DGLCMEDEQFSVKHYEARV-KDGVVQLRG 108  Escherichia coli
CAC19473         81 FALD-----SGQCLDAADVSVPVYEVRV-REGVVEVES 112  Amycolatopsis mediterranei U32
Q06458          916 IRLR-----DGRQCDGGEQAVRAWPVKV-ENGKVWVGN 947  Klebsiella oxytoca
CMCP6:VV2_0389   76 FCLK-----TGKCFEDESVKLTTWPVLV-ENDAVYVLG 107  Vibrio vulnificus CMCP6
AAP30019         70 IDLE-----TGQAQAPDVGCAHHHSARV-ENGRVQLAL 101  Pseudomonas chlororaphis
P42436           75 ISLE-----DGIVQEPDHGCVKTYETLI-EGEHVYLVY 106  Bacillus subtilis subsp. subtilis str. 168
KDR88110         72 ISLE-----TGKALGADEGEVRTIPVRN-LDGRLSIAL 103  Agrobacterium tumefaciens GW4
CAD28426       1008 FELNge--qAGRCTNDESMNIATFPVEErDDGWVYMKL 1043 Aspergillus fumigatus
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