Conserved Protein Domain Family
prok_dnaK

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TIGR02350: prok_dnaK 
chaperone protein DnaK
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. [Protein fate, Protein folding and stabilization]
Statistics
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PSSM-Id: 274091
Aligned: 20 rows
Threshold Bit Score: 948.287
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8TQR2     3 KILGIDLGTTNSCMAVMEGGDAVVLPNAEGSRTTPSVVGFSKKgEKLVGQVAKRQAISNPENTVYSIKRHMG-------- 74  Methanosarcina acet...
Q7MA35     3 KVLGIDLGTTNSAMAVFEGNEGKIIANKEGRNTTPSVVAFTDKgEILVGDPAKRQAITNPQKTIYSIKRIMGlmmsedka 82  Wolinella succinoge...
CAE77232   5 KIIGIDLGTTNSVVSVIEGGQPIILENPEGQRTTPSVVAFKNS-DIIVGGAAKRQAVTNP-NVVQSIKSKMGttsk---- 78  Mycoplasma mycoides...
P47547     7 LIIGIDLGTTNSCVSVMEGGRPVVLENPEGKRTTPSIVSYKNN-EIIVGDAAKRQMVTNP-NTIVSIKRLMGtsnkv--- 81  Mycoplasma genitali...
P95693     3 KIIGIDLGTTNSAVAVLEGTESKIIANPEGNRTTPSVVSFKNG-EIIVGDAAKRQAVTNP-DTVISIKSKMGtsek---- 76  Streptococcus agala...
Q7NDH1     3 KVVGIDLGTTNSVVAVLEGGQPTVIANAEGSRTTPSVVAFTKNhDRLVGQLARRQAVLNPENTFYSVKRFIGrky--dei 80  Gloeobacter violace...
Q826F6     3 KAVGIDLGTTNSVIAVWEGGEPSVVPNSEGNRTTPSVVAFTDTgERLVGQLARRQAILNPKGTIYSAKRFIGrhf--dei 80  Streptomyces avermi...
Q9RY23     3 KAVGIDLGTTNSVIAVMEGGRPEVIVNAEGGRTTPSVVAYKGD-EILVGQIARRQAALNPAATLFEVKRFIGrrw--dev 79  Deinococcus radiodu...
Q8RB68     3 KVIGIDLGTTFSCVAVMEGGQPVVIPNSEGTRTTPSVVAFTKEgERLVGHPARRQAIINPERTIMSIKRHMGt------- 75  Caldanaerobacter su...
Q8DKR6     3 KIIGIDLGTTNSCVAVLEGGNPVVIPNAEGGRTTPSIVAFGKSgERLVGQLAKRQAITNAENTIFSIKRFIGrrw--eet 80  Thermosynechococcus...
Q8TQR2    75 EAN---------------YKVTLN--GKTYTPQEISAMILQKLKTEAEAYLGETIKQAVITVPAYFNDAQRQATKDAGSI 137 Methanosarcina acet...
Q7MA35    83 KEAqkrlpyk-vvdrngaCAVEIA--DKVYTPQEISAKILMKLKEDAEAYLGEEVSEAVITVPAYFNDAQRKATKEAGTI 159 Wolinella succinoge...
CAE77232  79 ----------------------vnleGKDYSPEQISAEILRYMKNYAEAKLGQKVTKAVITVPAYFNDAQRKATKDAGTI 136 Mycoplasma mycoides...
P47547    82 ----------------kvqnADGT--TKELSPEQVSAQILSYLKDFAEKKIGKKISRAVITVPAYFNDAERNATKTAGKI 143 Mycoplasma genitali...
P95693    77 ----------------------vsanGKEYTPQEISAMILQYLKGYAEDYLGEKVEKAVITVPAYFNDAQRQATKDAGKI 134 Streptococcus agala...
Q7NDH1    81 TDEakqvayr-vvrdgsnVKLHSTneDKDFAPEEISALVLRKLVDDASKYLGEKITQAVITVPAYFNDSQRQATKDAGRI 159 Gloeobacter violace...
Q826F6    81 SDEaravtydvvegdggaARFKVR--DKLYAPEEISAQVLRKLADDASKQLGERVTEAVITVPAYFNDAQRTATKDAGRI 158 Streptomyces avermi...
Q9RY23    80 KEEaarspftvkegpsgsVRIEVN--GKDLAPEQVSAEVLRKLVSDASAKLGNKITDAVITVPAYFDNSQREATRQAGEI 157 Deinococcus radiodu...
Q8RB68    76 DYK-----------------VKID--DKEYTPQEISAMILQKLKADAEAYLGEKVTQAVITVPAYFNDSQRQATKDAGRI 136 Caldanaerobacter su...
Q8DKR6    81 AQErarvpyacvpgrdgmVDVQIR--DRTYTPQEISAMVLQKLKQDAEAYLGEPVTQAVITVPAYFSDAQRQATKDAGAI 158 Thermosynechococcus...
Q8TQR2   138 AGLEVLRIINEPTAASLAYGLDKgDVDQKILVYDLGGGTFDVSILELGGGVFEVKSTSGDTHLGGDDFDQRVIDHLLAEF 217 Methanosarcina acet...
Q7MA35   160 AGLNVLRIINEPTSAALAYGLDK-KHAEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRIIDWAAKEF 238 Wolinella succinoge...
CAE77232 137 AGLQVERIINEPTAAALAYGLDKqDKEETILVYDLGGGTFDVSILAIGGGSFDVIATSGNNKLGGDNFDEEIIKWLLGKI 216 Mycoplasma mycoides...
P47547   144 AGLNVERIINEPTAAALAYGIDKaSREMKVLVYDLGGGTFDVSLLDIAEGTFEVLATAGDNRLGGDDWDNKIIEYISAYI 223 Mycoplasma genitali...
P95693   135 AGLEVERIVNEPTAAALAYGMDKtDKDEKILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDFLVEEF 214 Streptococcus agala...
Q7NDH1   160 AGIEVLRIINEPTAAALAYGLDK-KANETILVFDLGGGTFDVSILEVGDGVFEVKSTSGDTHLGGDDFDRRIVDYLADEF 238 Gloeobacter violace...
Q826F6   159 AGLEVLRIINEPTAAALAYGMDK-KEHETVLVFDLGGGTFDVSILDVGDGVVEVRSTAGDSHLGGDDFDRRLVDYLADDF 237 Streptomyces avermi...
Q9RY23   158 AGLNVLRVINEPTAAALAYGLER-KGNETVLVFDLGGGTFDVTILELGDGVFEVKSTAGDTHLGGADFDYRIVDWLAGEF 236 Deinococcus radiodu...
Q8RB68   137 AGLEVLRIINEPTAAALAYGLDKeG-NQKVMVYDLGGGTFDVSILEIGDGVFEVLATSGNNHLGGDDFDQRIIDWLADNF 215 Caldanaerobacter su...
Q8DKR6   159 AGLEVLRIINEPTAASLAYGIDKqDQDQTILVFDLGGGTFDVSILQLGDGVFEVRSTAGNNHLGGDNFDECIVDWLLACF 238 Thermosynechococcus...
Q8TQR2   218 KKTE-GIDLSKDKAILQRLKDAAEKAKIELSGVTVTNINLPFLTVGPDGe-PKHMDIDLTRAQFQKMTEDLLEKTLVSMR 295 Methanosarcina acet...
Q7MA35   239 EAEN-GIDLKKDVMALQRLKDAAENAKKELSSANETEINLPFITADATG--PKHLVKKISRAKFESLIDDLIEQTIQKID 315 Wolinella succinoge...
CAE77232 217 KAEYn-IDLSKEKMALQRLKDEAEKAKINLSSQLEVEINLPFIAMNESG--PISFATTLTRSEFNKITKHLVDLTIQPVK 293 Mycoplasma mycoides...
P47547   224 AKEHqGLNLSKDKMAMQRLKEAAERAKIELSAQLETIISLPFLTVTQKG--PVNVELKLTRAKFEELTKPLLERTRNPIS 301 Mycoplasma genitali...
P95693   215 KKENg-IDLSQDKMALQRLKDAAEKAKKDLSGVTQTQISLPFITAGSAG--PLHLEMSLSRAKFDDLTRDLVERTKTPVR 291 Streptococcus agala...
Q7NDH1   239 KKLE-GVDLRTDRQALQRLTEAAEKAKIELSGVTQTQINLPFITAGADG--AKHLDMSLTRAKFESLCADLLRRVEKPVE 315 Gloeobacter violace...
Q826F6   238 QQEN-GIDLRKDPQALQRLFEAAEKAKTELSSVTQTQVSLPFITADASG--PKHLTDTVMRSTFEQITSDLVERCLGPVQ 314 Streptomyces avermi...
Q9RY23   237 QKEH-NFDLRKDKQALQRLIEAAEKAKIDLSNASETSISLPFITFDPETrtPMHLERSLSRAKFEELTADLLRRVRQPVE 315 Deinococcus radiodu...
Q8RB68   216 QKEH-GIDLRKDRMALQRLKEAAERAKIELSSAMVTNINLPFITADASG--PKHIDVNLTRAKFEELISDLVESTVGPVK 292 Caldanaerobacter su...
Q8DKR6   239 KEQE-GIDLSKDKMALQRLREAAEKAKVELSGTLSTSINLPFITADETG--PKHLEMELTRSKFEELCAHLVQATLEPMQ 315 Thermosynechococcus...
Q8TQR2   296 RALSDSKLTPNDLDKVILVGGATRMPAVVELVENFTG-KKPYKNINPDEAVAIGAAIQAGVLGGE--VKDVLLLDVTPLT 372 Methanosarcina acet...
Q7MA35   316 FVIKDAGLAKSDIAEVVMVGGSTRIPKVQQRVKDFIG-KELNKSVNPDEVVALGAAIQGGVLKGD--VKDVLLLDVTPLS 392 Wolinella succinoge...
CAE77232 294 DALSAAKKTPSEINEVLLVGGSTRIPAVQELVKSLLN-KEPNRSINPDEVVAMGAAVQGGVLAGE--VTDILLLDVTPLS 370 Mycoplasma mycoides...
P47547   302 DVIKEAKIKPEEINEILLVGGSTRMPAVQKLVESMVPgKKPNRSINPDEVVAIGAAIQGGVLRGD--VKDVLLLDVTPLT 379 Mycoplasma genitali...
P95693   292 QALSDAGLSLSEIDEVILVGGSTRIPAVVEAVKAETG-KEPNKSVNPDEVVAMGAAIQGGVITGD--VKDVVLLDVTPLS 368 Streptococcus agala...
Q7NDH1   316 QALRDAKLSKENIDEVVLVGGSTRIPAVQELVKRIIG-KDPNQSVNPDEVVAVGAAIQAGVLSGe--VRDVVLLDVTPLS 392 Gloeobacter violace...
Q826F6   315 QAMADAKVGESDIDEVILVGGSTRIPAVQALVRRLTGgKDPNMSVNPDEVVALGAAIQAGVLKGe--VKDVLLLDVTPLS 392 Streptomyces avermi...
Q9RY23   316 QALSDAKLSAGDINEVILVGGSTRIPAVKRIVQDLVG-KTPNESVNPDEAVALGAAVQAGIIQGDssLGDIVLVDVTPLT 394 Deinococcus radiodu...
Q8RB68   293 QALSDAGLKPEDIDKVLLVGGSTRIPLVQETVKKIMG-KEPHKGINPDEAVAIGAAIQAAVLAGE--IKDILLLDVTPLS 369 Caldanaerobacter su...
Q8DKR6   316 QAIADAGLTVEEIDRVLLVGGSTRIPAIQELVKQFCG-KNPDRSVNPDEAVAIGAAIQGGILGKEttVKDLLLLDVTPLS 394 Thermosynechococcus...
Q8TQR2   373 LGIETLGGIATPLIQRNTTIPTKKSQIFSTAADNQPSVEIHVLQGERGIASENKTLGRFTLDGIPPAPRGIPQIEVAFDI 452 Methanosarcina acet...
Q7MA35   393 LGIETLGGVMTKIIDRGTTIPVKKSQVFSTAEDNQPAVTIQVLQGERELARDNKSLGMFELSGIPAAPRGVPQIEVTFDI 472 Wolinella succinoge...
CAE77232 371 LGIETMGGVMTKLIERNTTIPAKRTQIFSTATDNQPAVDINVLQGERAMAADNKSLGQFQLTGIQPAPRGVPQIEVTFEI 450 Mycoplasma mycoides...
P47547   380 LSIETLGGVATPLIKRNTTIPVSKSQIFSTAQDNQESVDVVVCQGERPMSRDNKSLGRFNLGGIQPAPKGKPQIEITFSL 459 Mycoplasma genitali...
P95693   369 LGIETMGGVFTKLIDRNTTIPTSKSQVFSTAADNQPAVDIHVLQGERPMAADNKTLGRFQLTDIPAAPRGIPQIEVTFDI 448 Streptococcus agala...
Q7NDH1   393 LGVETLGGVATPIIPRNTTIPTRKSETFSTAADGQTSVEIHVIQGERSMAGDNKSLGRFRLDGIPPAPRGVPQVEVTFDI 472 Gloeobacter violace...
Q826F6   393 LGVETRGGVMTKIIERNTTIPVRRSETFSTAEDNQPAVDVVVLQGERERAADNRVLGRFQLTDIRPAPRGEPQVEVTFDI 472 Streptomyces avermi...
Q9RY23   395 LGVEVKGGMIAPMITRNTTVPAKKTEIYTTAENNQPGVEINVLQGERPMAADNKSLGRFKLEGIPPMPAGRAQIEVTFDI 474 Deinococcus radiodu...
Q8RB68   370 LGIETLGGVFTKIIERNTTIPVRKSQIFTTAADNQTSVEIHVLQGERPLAKDNKSLGRFILSGIPPAPRGVPQIEVTFDI 449 Caldanaerobacter su...
Q8DKR6   395 LGLETLGGVFTKIIERNTTLPTSKTQTFSTASDGQTVVEIAVYQGERPIAKDNKQLACFELTGIAPAPRGVPQIDVTFDI 474 Thermosynechococcus...
Q8TQR2   453 DANGILHVNAKDLGTGKEQSISIQKPGGLSDAEIERMVKDAELHAEEDKKRKEEVETRNNAEALINAAEKTIKEAGDV-A 531 Methanosarcina acet...
Q7MA35   473 DANGILTVSAKDKATGKSQEIKITGSSGLSDSEIEKMVKDAELHKEEDSKRKSMIEAKNQADSLLYQTEKSLGEFKDQ-L 551 Wolinella succinoge...
CAE77232 451 DANGIVSVSAKDKNTNEEKTITISNSGNLSEAEVERMIKEAQENAANDEVKKKNIELKNKAENYINIIENSLLQAGDK-I 529 Mycoplasma mycoides...
P47547   460 DANGILNVKAKDLTTQKENSITISDNGNLSEEEIQKMIRDAEANKERDNIIRERIELRNEGEGIVNTIKEILASPDAKnF 539 Mycoplasma genitali...
P95693   449 DKNGIVSVKAKDLGTQKEQHIVIQSNSGLTDEEIDKMMKDAEANAEADAKRKEEVDLKNEVDQAIFATEKTIKETEGKgF 528 Streptococcus agala...
Q7NDH1   473 DANGILSVTAKDKASGKAQTISITGASTLSKDDVAKMVNEAESFAGEDKKRREAVDLKNEADSLAYQAERQLTEFGDK-V 551 Gloeobacter violace...
Q826F6   473 DANGILNVTARDKDTGKEQGITISESSNLDRSEVERMVQEAERNQGQDQALREAVDARNELDAVAYQVEKRLAELGDA-A 551 Streptomyces avermi...
Q9RY23   475 DANGILHVTAKEKTSGKESSITIENTTTLDKTDVERMVQEAEQNAAADKQRKEKVEKRNNLDSLRVQAVQQLEEQ-EG-A 552 Deinococcus radiodu...
Q8RB68   450 DANGIVHVSAKDLATGKSQQITITGSTNLSEEEIQRMINEAKQYEEQDRKKREEIEIRNRADSLIYQAEKTMKDLGDK-M 528 Caldanaerobacter su...
Q8DKR6   475 DANGILSVSAVDRATGRQQSVRITNRGGLSSMEIERMRQEAQIYAQVDQIKKEIAELRNQADALLYSYESTIKNHGIT-L 553 Thermosynechococcus...
Q8TQR2   532 TEDQKSKVNAAIEDLKKALEGKDTEE--VKAKTEALQEAVYPISTAMYQ 578 Methanosarcina acetivorans C2A
Q7MA35   552 EESERTKIESAINDLKETLKKENLTKeeIDEKVKALTEVSHKLAEAMYK 600 Wolinella succinogenes DSM 1740
CAE77232 530 SAEQKEQSQKMVDEIKELVKNENYEA--LEQKMAELEQAMAQAAEFANK 576 Mycoplasma mycoides subsp. mycoides SC str. PG1
P47547   540 PKEEKEKLEKLTGNIDAAIKANDYAK--LKVEIENFKKWREEMAKKYNP 586 Mycoplasma genitalium G37
P95693   529 DTER-DAAQSALDELKKAQESGNLDD--MKAKLEALNEKAQALAVKLYE 574 Streptococcus agalactiae serogroup III
Q7NDH1   552 DSSDKSKIEGLIKDLREALSRED-MDk-VASLKADLQQAVYDLSSKLYQ 598 Gloeobacter violaceus PCC 7421
Q826F6   552 PAHEKARAEMLVSDARAAVKEEAGVEr-VRPLTSELQQVLAGLAAHQGA 599 Streptomyces avermitilis MA-4680 = NBRC 14893
Q9RY23   553 AQDAKDRLKAAADEAEEAVRSED-DSk-IADAQKKLEEELRSFMTANQA 599 Deinococcus radiodurans R1
Q8RB68   529 TQAEKDEINKEIENVRKALEGTDVe--aIKAASEKLSEAFYKVSTRLYQ 575 Caldanaerobacter subterraneus subsp. tengcongensis...
Q8DKR6   554 SPELRARIEPVVQSMQAAMVDDNITPdeIRKRMEALQQALVTLGSVVYQ 602 Thermosynechococcus elongatus BP-1
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