2C5U


Conserved Protein Domain Family
RNA_lig_T4_1

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TIGR02308: RNA_lig_T4_1 
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RNA ligase, T4 RnlA family
Members of this family are phage proteins with ATP-dependent RNA ligase activity. Host defense to phage may include cleavage and inactivation of specific tRNA molecules; members of this family act to reverse this RNA damage. The enzyme is adenylated, transiently, on a Lys residue in a motif KXDGSL. [Mobile and extrachromosomal element functions, Prophage functions, Transcription, RNA processing]
Statistics
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PSSM-Id: 213699
Aligned: 5 rows
Threshold Bit Score: 589.864
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2C5U_A     3 QELFNNLXELCKDSQ-RKFFYSDDVSASGRTYRIFSYNYASYS-DWLLPDALECRGIXFEXD-GEKPVRIASRPXEKFFN 79  Enterobacteria phag...
P00971     2 QELFNNLMELCKDSQ-RKFFYSDDVSASGRTYRIFSYNYASYS-DWLLPDALECRGIMFEMD-GEKPVRIASRPMEKFFN 78  Enterobacteria phag...
AAQ81522   5 TELYDNLMNVVNSSEkGNFFFKDVTTSMGTKARIFSYFIASYS-DWLIPGALESRGIMFEITeEGKPVRIMARPMQKFFN 83  Aeromonas phage 44R...
AAL15124  11 LALFKNLMALCDGSD--TFYYKDEITAMQTRMRIFSYLYLSKPeMWNKPDALECRGIMFEIDdKGRPVRIASRPMEKFFN 88  Enterobacteria phag...
AAQ17969   5 KELYQNLINLCVDDN-TKFYFAETVTSLGTKVRIFDYHVAGYN-DWIRPDAMASRGIMFEMN-GEIPVRIMSRPMDKFFN 81  Aeromonas phage Aeh1
2C5U_A    80 LNE--------NPFTXNI-DLNDVDYILTKEDGSLVSTYLDGD----EILFKSKGSIKSEQALXANGILXNINHHRLRDR 146 Enterobacteria phag...
P00971    79 LNE--------NPFTMNI-DLNDVDYILTKEDGSLVSTYLDGD----EILFKSKGSIKSEQALMANGILMNINHHRLRDR 145 Enterobacteria phag...
AAQ81522  84 LKE--------NPFTMNL-DLTKMVGLMEKADGSLISSYHDQG----YIFLKSKAAIHSDQANKAMALLNSPAYEKLRER 150 Aeromonas phage 44R...
AAL15124  89 LGE--------NDRARFKp--EDVEMVMDKMDGSLVSTYIDNG----YVQLKSKAALYSSQAERANGLLYSEKYADLRAK 154 Enterobacteria phag...
AAQ17969  82 YSEvigwekleTAGNMKMpDLNKIAYVIDKRDGSLISTYLDISgeikNLLLKSKASIRSNQANDASVWLYQEDHKDLLEF 161 Aeromonas phage Aeh1
2C5U_A   147 LKElAEDGFTANFEFVAPTNRIVLAYQEXKIILLNVRENETGEYISYDDIYKDATLRP-----YLVERYEIDSP---KWI 218 Enterobacteria phag...
P00971   146 LKElAEDGFTANFEFVAPTNRIVLAYQEMKIILLNVRENETGEYISYDDIYKDATLRP-----YLVERYEIDSP---KWI 217 Enterobacteria phag...
AAQ81522 151 IAD-SGPGYTFNMEYVGPSNRIVLPYEDEELIVLNVRHNETGEYVNISTLMNDPATRSrmvgvYPSPDWEKITPa--EWE 227 Aeromonas phage 44R...
AAL15124 155 IAD-IGSDYTFNFEYTAPSNRIVVEYSEPSLTLLNVRHNVTGEYVPHQMLFADAILRP-----HLVNALQVDSArfsNIL 228 Enterobacteria phag...
AAQ17969 162 CTAyAENGFTVNMEWTAPHNQIVLCYNEHQLRILNIRHNETGEYVDFGELQKDPTFVK-----YAADFFEVPGDg-kAWI 235 Aeromonas phage Aeh1
2C5U_A   219 EEAKNAENIEGYVAVXKDGSHFKIKSDWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAXYADDEYSYRKIEAFETTYLK 298 Enterobacteria phag...
P00971   218 EEAKNAENIEGYVAVMKDGSHFKIKSDWYVSLHSTKSSLDNPEKLFKTIIDGASDDLKAMYADDEYSYRKIEAFETTYLK 297 Enterobacteria phag...
AAQ81522 228 AGVRAETDIEGVIGIMDDGQLFKLKTDWYSALHRTKDSINNNKALIQSIKERATDDLRGLFADDAVSIAKIEDFEELYIS 307 Aeromonas phage 44R...
AAL15124 229 DEVRIAEGIEGIVARTKDGQMFKVKSEWYIGVHNIKNTSMFPNNLIYYVVESETDDLRAAYEGEPEALERIELFEEAFRS 308 Enterobacteria phag...
AAQ17969 236 DEVYQMTGIEGFVVVMEDYQMFKLKTDWYVALHHTKDSINNSERLIYACAENCTDDLRQMFRDDENSLQKIEIFDNHFRD 315 Aeromonas phage Aeh1
2C5U_A   299 YLDRALFLVLDCHNKHCGKDRKTYAXEAQGVAKGAg--xDHLFGIIXSLYQgYDSQEKVXCEIEQNFLKNYKKFIPEGY 375 Enterobacteria phage T4
P00971   298 YLDRALFLVLDCHNKHCGKDRKTYAMEAQGVAKGAg--mDHLFGIIMSLYQgYDSQEKVMCEIEQNFLKNYKKFIPEGY 374 Enterobacteria phage T4
AAQ81522 308 TISRYHELCFSVYQSLQGKDRRSFAIEAQAKLSDH----RYLFSIVMRQYArDWDSEEVIGAIEEHMVKNYDKYTPAKY 382 Aeromonas phage 44RR...
AAL15124 309 ILRNAFTTATEFYNAHAGEDRKTYASNATIESRKHgdahAYIFMCLMIAFD-GLDYDRIMDSMKTYYLRNYKKLIPADK 386 Enterobacteria phage...
AAQ17969 316 VVMDAMKKLTEAYEKYRGMERRDYAINMNNDFKNE----RHWFNIAMQMFA-QRPDFSMTDEIVAVIKKYPKTFIPKGY 389 Aeromonas phage Aeh1
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