Conserved Protein Domain Family
RNA_lig_DRB0094

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TIGR02306: RNA_lig_DRB0094 
RNA ligase, DRB0094 family
The member of this family from Deinococcus radiodurans, a species that withstands and recovers from extensive radiation or dessication damage, is an apparent RNA ligase. It repairs RNA stand breaks in nicked DNA:RNA and RNA:RNA but not DNA:DNA duplexes. It has adenylyltransferase activity associated with the C-terminal domain. Related proteins also in this family are found in Streptomyces avermitilis MA-4680 and in bacteriophage 44RR2.8t. The phage example is unsurprising since one mechanism of host cell defense against phage is cleavage and inactivation of certain tRNA molecules. A fungal sequence from Neurospora crassa scores between trusted and noise cutofffs and may be similar in function.
Statistics
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PSSM-Id: 274075
Aligned: 3 rows
Threshold Bit Score: 522.939
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAC74316       3 TLRVTAEVLTIHPHPNADALELAQVGLYRAVVAKGAYRTGETAVYIPEQSVLP---AGLIEELGLTG-RLAGSGSDRVKA 78  Streptomyces av...
AAQ81527       8 QLASMRKIADLQPIPGADAIEVATIDGWEVVVKKGEFRVGSDCVYFEIDSLLPt-dHPAFRFLETRAkIYDGKMRARIKT 86  Aeromonas phage...
WP_010884030   3 ERQVIKERAQLFPHPNAERLELCKVGTFQLVVRKGEYRDGDPIVIAPEKAVLPpqlAGLYTNADTGAsYLHGAEKNRVGS 82  Deinococcus rad...
BAC74316      79 VRLRGELSQGIVCRPKALADVDLARTVADGTDFAELLGITKWVPPIPPTMSGEIESVP--DLLRWVDIENIQRYPDIFTP 156 Streptomyces av...
AAQ81527      87 IKLRGQISQGIALPTGAFTVGELLGGQEMDKTIDQMLDIIKYEPPQDGTGCNPGGTFP--IFIPKTDEERCQNIFNRYKE 164 Aeromonas phage...
WP_010884030  83 VRLRGEVSQGVILPLDGLEDAPFG------EDLAERLGITFWEPPVPVSMAGEVEPRPpaQHYKHHDVEQFGIYVSEFAS 156 Deinococcus rad...
BAC74316     157 ---GEPVVLTEKLHGTACLVTYLADEDRVHVSSKG--------------FGAKSLALKEDPRNLYWRAVHGHGVAQAAAr 219 Streptomyces av...
AAQ81527     165 kyaDVKFAKSLKLDGSSITMAWVTDPELFLDLGTEeepyahdyddaqfiVASRNQVLRYNADSKWWKGVENYQIVDRLK- 243 Aeromonas phage...
WP_010884030 157 ---GEEVMVTEKLHGTQG-VYFRTAEGRWLVTSKG--------------LSRGGLTLREAASNVYWQAARNSNLFAEADa 218 Deinococcus rad...
BAC74316     220 laerLGARRVGIFGEVYGAGVQDLTYGADGRRdtlgyaVFDVSADIDGEVRWLDAADRLDGELP----LVPRL-YEGPYD 294 Streptomyces av...
AAQ81527     244 ----ELRMSVAIQGELMGPGIQKNRENFDKYR------IFAFRAFFIDEQRFATDEEFQDLCRTlgmeICPQLgYSYPFQ 313 Aeromonas phage...
WP_010884030 219 ---aFSGGEVQIFGEVVPV-QKGFSYGQHKPt------VFVFKVVYDGLR--LPRRDWPQWVLDh---AVPVL-YEGPFD 282 Deinococcus rad...
BAC74316     295 IERVLETASGRETVSGHGLHLREGVVIRSATErrspVTGGRAIAKAVSPAYLTR 348 Streptomyces avermitilis MA-4680 = NBRC 1...
AAQ81527     314 EFTNVKDMLAAADIPSIEHKIAEGVVYKSVEL----VDGRMVHFKAINNKFLLK 363 Aeromonas phage 44RR2.8t
WP_010884030 283 EATVRKLRGGLETVSGKGLHIREGVVVAPKVPrf-aADGSDLSVKLISDAYAKK 335 Deinococcus radiodurans
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