3SKS


Conserved Protein Domain Family
M3_not_pepF

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TIGR02289: M3_not_pepF 
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oligoendopeptidase, M3 family
This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Statistics
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PSSM-Id: 274068
Aligned: 7 rows
Threshold Bit Score: 789.335
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3SKS_A          16 IEELKEKFTVALEKFDNAKtvEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDa-FYKEEQDFFDEFSPVVQGYGTKY 94  Bacillus anth...
AAP08320        13 IEELKEKFTVALEKFDNAKtvEEQKQVIHSINEIRNDFGTMGNLCYIRHSVDTTDt-FYKEEQDFFDEFSPVVQGYGTKY 91  Bacillus cere...
AAL95341        13 MEKVKKIFKEIKEKIENANsaNEQIKIIEEFADFKKDLYTTIEIAYVRLSIDTTDe-FYENENNFFDENKPIIETLNTEV 91  Fusobacterium...
BAD04263        13 IAQNKQTILPMIEAFLDASl-PEQIKIINRLNSLMDEINSMFTLAEIRHSLDVKDt-FYQQEKHFCDQNAPLLTELQHQF 90  Onion yellows...
tigr:GBAA_2825   2 FNDLESKLQSLLERNITSV--LELENWLFDELRVNAEIEEKITSSLIATYRDTDNrnMRDLHMYNQNTIQPLLKRYNAKF 79  Bacillus anth...
WP_015920047    13 WEEVEPVVRELLDFQISSP--EEFRTFINKVTDFFDRVREEHGWLYIKMTVNADKeeFAKAYEEFQKEIVAKLKPYEQKI 90  Thermotoga ne...
AAP09484        12 VLQLEKTLSTLLNKMISSK--LDLENWLKEQSKVIWDIEEQLRSHYIAFQCNTDDeeIKDTFEHDQQFVKPLLKRYQNLL 89  Bacillus cere...
3SKS_A          95 YNALIHSPFREELEAYYGKQLFALAECDLKTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLSQLIPFMQGKER 174 Bacillus anth...
AAP08320        92 YKALINSPFREELEAYYGKQLFALAECDLKTYSDEVVKDLQLENKLSSQYTQLLASAKIDFAGEERTLSQLIPFMQGKER 171 Bacillus cere...
AAL95341        92 SRVIYNSKFRDELEKRFGKHYFKLLECKLVLN-EKAIPFMQKENILSTKYDKIIANSKIIFRGKEYTVSQMPPLLQNPDR 170 Fusobacterium...
BAD04263        91 SQTMVKSKHYDALVQEFGPLLFDQTKLFLKTFDPKIIPYLQEENTLTTKYQKLISDPSVAFEGKLYNLSQMAPFLESSQR 170 Onion yellows...
tigr:GBAA_2825  80 DQKFIECPFSNLLDERKYEFMKKARFVKSKMFNEKNIALSIKGQECITKYREIMSNITINWEGEQKTYAHVKAKLDNPNR 159 Bacillus anth...
WP_015920047    91 KEKIVEN---EHFAPRGYEHMIKVIKNDVELFREENVPLQVKESILSRNYGTIVGNIEVDFEGEKKTLQQLSVYLRDPDR 167 Thermotoga ne...
AAP09484        90 DNKYLESPFRMELDSNVYGLLDTKIKNAQKLFCEENIELEIKEDKLVTEYFEITGGLSGIWDGEEKTITELQSYLQDSNR 169 Bacillus cere...
3SKS_A         175 SERKAASEAYYGFLAENEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQVLDYIVPVTTEL 254 Bacillus anth...
AAP08320       172 SERKAASEAYYGFLAGNEEELDRIYDELVKVRTKIAKSLGFKNFVELGYARMYRTDYNAEMVANYRQQVLDYIVPVTTEL 251 Bacillus cere...
AAL95341       171 EFRKEAYQARAKFFEDHQEEFDNIYDEMVKVRTEMAHVLGYENYIDLQYKLLNRTDYNHKDVAKYREKVLKTLTPLAIKI 250 Fusobacterium...
BAD04263       171 QTRKNAQLAVSQFFAKNEQEYDLIYDQLVQTRTKMAQILGYSNFVALGYDLLGRTDYDANQIADYRTNILKYVLPFYTMT 250 Onion yellows...
tigr:GBAA_2825 160 AIRKKAWYALCEARSVVKPEVDRIMNELIQLRNEIALNAGFNNYSEYAFKQKNR-DYSIDDCYKLHESIEKYVVPIWKQL 238 Bacillus anth...
WP_015920047   168 STRELAWRKRYEGIWEVRDKLNKLFDELKEIRHQQALNAGFSNYRDYMHRLKSRFEYTPEDLYRFHEAVEKEVVPYLVER 247 Thermotoga ne...
AAP09484       170 DTRKKAKTIISEQFLSVEKELQNILNQLIEIRHQKAKNIQLENYRDYMFKKYERFDYSAIDCYELAESIRKYVVPLKDKI 249 Bacillus cere...
3SKS_A         255 RKRQQARIGVEKLAYYDENFEFPTGNP-TPKGDADWIVNHGKTMYKELSAETDEFFNFMLDNDLLDLVAKKGKAGGGYCT 333 Bacillus anth...
AAP08320       252 RKRQQARIGVEKLAYYDENFEFATGNP-TPKGDADWIVDHGKTMYKELSAETDEFFNFMLDNDLLDLVAKKGKAGGGYCT 330 Bacillus cere...
AAL95341       251 REKQAERLGIKDFKYFDEACDFRDGNS-NPNGDVDFIVKNAQKMYSELSSETGKFFDFMIENELMDLVAKPKKRVGGYCI 329 Fusobacterium...
BAD04263       251 QKRKSKRLGIAKLESYDKSFNFSSGNP-KPQRGVDFQLTQAKKMYHAMSLQTKLFFDFLLEKNLLDLDSKPNKTGGGYCT 329 Onion yellows...
tigr:GBAA_2825 239 GSISKKNLDVKTYRPWDLSPCNLPK---APFQNAINLLDGVEEMFRTTDLYFYEKFIHIRKAGCIDVEERENKAAGAICF 315 Bacillus anth...
WP_015920047   248 TKIRQRKLGIESVRPWDT-AVDVDGKVlKPFSSVEEFMEKTERALKRLNPTFAERFRLMREKNLLDLENRKGKAPGGYNH 326 Thermotoga ne...
AAP09484       250 LLEKKDKLQLDTLRPWDVSAVTPDQKVlKPIANENDLIEKSTHIFNKLDVEFSALLNRMYKHNCLDLTSRKGKAAGGFCE 329 Bacillus cere...
3SKS_A         334 YIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVyESRK-FEIPEYNWPTYEACEIHSMSMEFFTWPWMKLFFe--EDAD 410 Bacillus anth...
AAP08320       331 YIENYKAPFIFSNFNGTSGDIDVLTHEAGHAFQVyESRK-FEIPEYNWPTYEACEIHSMSMEFFTWPWMKLFFe--EDAD 407 Bacillus cere...
AAL95341       330 SFDKYKSPFIFSNFNGTKGDIDVITHEAGHAFQCyMSQY-QLLPEYIWPTYDAAEIHSMSMEFLTWPWMELFFg--KNAN 406 Fusobacterium...
BAD04263       330 YLPKYSAPFVFANFNGTSHDVDVLTHEIGHAFQVyQSR--HLIPEYRWPTFEAAEISSMGMEFLAYPWVKDFFa--QDVD 405 Onion yellows...
tigr:GBAA_2825 316 TLPHSKEVFVYSNFSPSFYAINALIHEVGHAFHFyKQFKnDSSMQERYLREEVAELYSLSLELLVMDKLNVFYkqeDEYK 395 Bacillus anth...
WP_015920047   327 TLPKTGAPFIFMNAVGQPGDVRTIFHELGHSMHSfETLS--LPVFYRPHRMEVAELASMSLELISMEYWDEFYtdpEDLK 404 Thermotoga ne...
AAP09484       330 YLPASQLSYIFMNLNYTQDDIVTFIHEMGHSIHN-ELIKpLKLRQYIEIPAETAELASMTMELFSLNYWDTFYtdkKDLK 408 Bacillus cere...
3SKS_A         411 KYYFSHLSSALLFLPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEDNDYLERGGFWQRQGHIYSSPFYY 490 Bacillus anth...
AAP08320       408 KYYFSHLSSALLFLPYGVSVDEYQHYVYENPEASPEERKTAWRNIEKKYLPHRDYEENDYLERGGFWQRQGHIYSSPFYY 487 Bacillus cere...
AAL95341       407 KFKYSALKGALTFIPYGVTIDHFQHYVYENPNATPEERRKKYHELELMYEPDLEYD-NDFYNSGAFWFSQGHVFWAPFYY 485 Fusobacterium...
BAD04263       406 KYQFLHLSQSLNFLLYGALVDHFQHEVYQNPQMTPAQRKECWRNLEKKYLLLETYEGDPFLEKGTFWFRQSHIFSTPFYY 485 Onion yellows...
tigr:GBAA_2825 396 EVQRVQIYRALSLLMSSIAGDVFQHWIYENPNHTPEERDKKYAEICKRYQYSTVDIAGLEDEIGASWIESFHYVQFPFYK 475 Bacillus anth...
WP_015920047   405 KAKIEELEGALYFLPWCMIVDAFQHWIYTNPDHTPKERDEYFAYLMDRFN-PGVDWSDLDEEKKTRWLFQLHIFEVPFYY 483 Thermotoga ne...
AAP09484       409 QAKINFFKDVISYLPIMLIVDQFQHWLYENPSHTSKERNEKYLQLQKHYQSSVIHIDGYENWIATSWLPVLHIFEVPFYY 488 Bacillus cere...
3SKS_A         491 IDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHAID 563 Bacillus anthracis s...
AAP08320       488 IDYTLAQICALQFWKRARDNRQEAWEDYVNLCQQGGSKSFLELVEVANLTSPFAEGCVKSVITEIEAWLHAID 560 Bacillus cereus ATCC...
AAL95341       486 IDYTLAQVCAFQYLLKYLDNKEETLKEYITLCKAGGSESFFKLLEIGKLKNPMNTDILEEITPKLEELLNSIK 558 Fusobacterium nuclea...
BAD04263       486 IDYTLAQVCALEIWLLSKQDYSNTWQKYLKLCQLGGSQTFLNLLKTTGLTNPFEPNHLKNIVSFVTCYLQKID 558 Onion yellows phytop...
tigr:GBAA_2825 476 IEYAIAQIGAMQLFQIYWEDPEKAIDFFKEGASADWNLSIQEIYEKTGVTFDFSEERIESTASVILDLINELK 548 Bacillus anthracis s...
WP_015920047   484 IEYGIAQIGALAIYRNYIEDPEKTLKDYQRFLSVGCSMPVDEVYKTAGIELKFSRDYIREIVDFVAKQIEEIE 556 Thermotoga neapolitana
AAP09484       489 IEYAIAQLGALQMYKQYKEDPKQALENYKKALSLGSSQSIKDVYDAAGIRFDFSGETIKELMLFVEKELELLE 561 Bacillus cereus ATCC...
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