Conserved Protein Domain Family
beta_rpt_yvtn
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TIGR02276: beta_rpt_yvtn 
40-residue YVTN family beta-propeller repeat
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (pfam00400).
Links
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Statistics
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PSSM-Id: 213697
Aligned: 22 rows
Threshold Bit Score: 33.8088
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
AAM06491      86 PAGTKIYVVDSPSDSTVyVIDTATNKVSAKVN-LGsSYPARITFN 129 Methanosarcina acetivorans C2A
CAC12443     576 PYDNSLYVSNSGSNDVY-VINATTEGVEAIIP-VG-IYPFRDCVD 617 Thermoplasma acidophilum
AAC46163     150 PDERRLYVGNVRSNDLT-VIDTGTLKAIATVP-AG-AMPYGVSVS 191 Methylobacterium extorquens AM1
AAN70957     200 PDGRTLYIANMKSDSVS-LIDVVTLKETAQIP-VG-KGPVQVGFA 241 Pseudomonas putida KT2440
AAM77048     199 PDGATLLVANRESDSVS-IIDVGSRRETRQVS-VG-QHPFGLTLS 240 Methylobacterium extorquens
BAC49971     145 PDGKLLLSADRDDDSVS-VVDTATRARKAVIK-VG-TRPFGVTID 186 Bradyrhizobium diazoefficiens USDA 110
BAB66837      75 PSNGYIYVADSGSDTVS-IINSTTNHVIANIT-IK-GHPWSLLYD 116 Sulfolobus tokodaii str. 7
BAB66837     117 PSNGYIYVTSLVS--LF-VIDPSTNQVIANITnVL-LSPLQVLDN 157 Sulfolobus tokodaii str. 7
CAC12443     451 PSNGYVYSINQLSDDVS-VINPSNNSVISSII-TG-SSPFNGVYD 492 Thermoplasma acidophilum
WP_028053917 103 PSGNPLYIANEDDNLVT-VVDVKTRQVLAEVP-VG-VEPEGVAVS 144 Sinorhizobium meliloti
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