Conserved Protein Domain Family
recomb_radB

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TIGR02237: recomb_radB 
DNA repair and recombination protein RadB
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Statistics
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PSSM-Id: 274047
Aligned: 7 rows
Threshold Bit Score: 290.472
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q9HPF2  15 LDELLGGGVERGTVTQLYGPPAAGKTNVALTTAVTTAAAgglAVYVDTEG-LSLARFQQLLEARatdPEAASANVIVSDA 93  Halobacterium sp. NRC-1
Q9V2F6  10 LDELLGGGVARGVILQVYGPFATGKTTFAMQVGLLNEGK---VAYVDTEGgFSPERLKQMAESRgldPEKALSKFIIFEP 86  Pyrococcus abyssi GE5
O28184  13 IDSLLGGGVETGTVTQIYGHGGTGKTTLCLMLAKNAAEQf-kVAYIDTEG-LSGERVRQIFGD-----ERLFSNVFVYEV 85  Archaeoglobus fulgidu...
Q57702   2 LKEILLGNAEKGIITQIYGPPGVGKTNICIINSINAVNSg-kVIYIDTEGgLSIERIKQIASNN---YKIVLENMIIYNA 77  Methanocaldococcus ja...
O27728  19 IDRILGGGVERRTITQFYGPPGSGKTNITIKLAVETARRgknTVFIDTEGgLSVERIRQVSGDI---FDRVADSIIVFEP 95  Methanothermobacter t...
Q9HJD3  20 IDALLNGGLEGGIITEIFGEGGSGKTNICMIASCSAMSQglkVIYIDSEG-LSPERFLAVCRSD-------ISMFKLFRV 91  Thermoplasma acidophi...
Q97B99  21 IDGLTNGGLEAGIITEIFGEGGSGKSNVCMLAACSALRLgkkVVFIDSEG-FSSERFLSICKAD-------NSKLKVIRV 92  Thermoplasma volcaniu...
Q9HPF2  94 HDFDEQAQAVRDTADFADR----ADLIVVDSVTGFYRLARGGDdtt-gdaLRQVADQITHLLSLARKHDLAVVVTNQVFT 168 Halobacterium sp. NRC-1
Q9V2F6  87 MDLNEQRRIISKLKTVVSDk---FSLVVVDSLTAHYRAEGSRD-------HVELAKQLQVLQWLARKKNVAVIVVNQVYY 156 Pyrococcus abyssi GE5
O28184  86 YRFRQQGVAIQEAEKLCRSe--kVKLVIVDCFTSLYRSELEDDrkq-ikiKRELTSQLTFLLGMARKYDVAVVITNQMFT 162 Archaeoglobus fulgidu...
Q57702  78 FDFYEQDKIIQKELPLITNn---ASLIVVDNITSLYRLELSDEanknimlNKMLGNQVKTLLKLAKTNNLAVIITNQVRE 154 Methanocaldococcus ja...
O27728  96 SSFTEQGEALQRTFSFLKThgdsTDLVVLDSAVALYRLKEGNAss----fNLDLGRQMFLLLQMARRFDLAAVITNQIYS 171 Methanothermobacter t...
Q9HJD3  92 YSLDDQEVAIMKASKMADRdq-kIGMIVLDSFSEFFRLEKSDDrq---arIAEFQRQLSLLSSVAAKKNIPVLITNQIYQ 167 Thermoplasma acidophi...
Q97B99  93 FSLDDQEVAITKFSKIIEKda-sYGLFILDSFSEFFRLERTGDnq---srVIDFQRQLSLLSSIAAKRKIPVLITNQIYQ 168 Thermoplasma volcaniu...
Q9HPF2 169 DVDnd-sdRARPLGGHTLAHWTGTVLRLDRF-RgGTRRATLEKHRAKPDGEHAQFQITDGGID 229 Halobacterium sp. NRC-1
Q9V2F6 157 DSNt---nTLRPIAEHTLGYRTKDILRFEKF-RvGVRLAVLERHRFRPEGGIVYFKITDKGIE 215 Pyrococcus abyssi GE5
O28184 163 DVGs---gVDRPLGGPSLEHLSKVIIALERSn--ELRKATLIKHRWMKEGKSCFYRITDRGIE 220 Archaeoglobus fulgidus DSM 4304
Q57702 155 TVNg-----FEASGGRLLEYWSKCIVRLEKLn--GDRLAILEKHLHAGE-ERVKFRIVERGIE 209 Methanocaldococcus jannaschii DSM 2661
O27728 172 ITGddgreYVSPVGGTLLRYWSKVMVELEMGeRpGERFAVLRRHRNRLEGSRVGFRIVADGIL 234 Methanothermobacter thermautotrophicus...
Q9HJD3 168 DIDn---gTLLPFGGFLVDHAMKAILRIEKMpD-GRRRITVTKHRSVREGVSAMFRITDDGVS 226 Thermoplasma acidophilum DSM 1728
Q97B99 169 DIAn---gDILPFGGYVVDHIMKAIYRLERLpD-GRRKMTVMKHRSVKEGNSVEFRIVQDGIS 227 Thermoplasma volcanium GSS1
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