Conserved Protein Domain Family
phage_chp_gp8

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TIGR02215: phage_chp_gp8 
phage conserved hypothetical protein, phiE125 gp8 family
This model describes a family of proteins found exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus gene transfer agent, which packages DNA. Members of this family show some similarity to members of pfam05135, a putative DNA packaging protein family. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 274035
Aligned: 4 rows
Threshold Bit Score: 236.238
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
tigr:BR0590    1 MTMFLVTPPALEPVTIADARAFLRIST-----ESEDDILGRLITTARELVEAETGLALIDQTWRLRVDRWPRSGRLALFK 75  Brucella suis 1330
CAE27337       1 MPMLLLAGPAAEPWTVTDLKSFLRVEH-----EADDAVIASLLTAARAQIEASTCKMLLAQRWRLVLDAWPRDGRLVLRS 75  Rhodopseudomona...
KEY55359       1 MTYALIHPPQAEPLTLAEVKAHLRLDG-----GEEDALLAALLRTAREHLERVTGLCLIRQTWRLYLDRWPETGVILIGK 75  Agrobacterium t...
WP_011047981   6 MMLIEETAVADAALPVAQFKAHLRLGTgfaedDVQDEVLRSFLRAAIAAIEARTGKILISRQFSWTVYNWRDATGEVLPV 85  Ruegeria pomeroyi
tigr:BR0590   76 YPIKAVTGVVAYRPDGAAISFLPDEFALHHDRRPQRLYMAQYPDAS-TFCG-IEVDFIAGFGESGVEVPDTLKQAILTLT 153 Brucella suis 1330
CAE27337      76 GPLRSLIAVRTYDERGYTHGLDLDSFVLDLAGGVIASPPWALPEPGrAVAG-IELDLELGYGTAPEDVPPPLRHAVRTLA 154 Rhodopseudomona...
KEY55359      76 GPVQAIETILVFDGQGRAADITGADRLLDGLARPARLWLRDPPSPGrAMNG-IEIDFVAGYGEAGTDVPGTLKRAMLMHV 154 Agrobacterium t...
WP_011047981  86 VPVQMVTSVTLRDGGGQDTVLDPAAYRLERDSQRPRLRPAGALLPTvATGGaAIVALVAGMAADWGGLPADLGQAVLLLA 165 Ruegeria pomeroyi
tigr:BR0590  154 AHLYESRAGVNAdavQRSFPPIVNQMVDSWRRISL 188 Brucella suis 1330
CAE27337     155 AQWYDNRGSGAG---AALLPGGVAAMIAGYRAVAL 186 Rhodopseudomonas palustris CGA009
KEY55359     155 AQMFAFRGAVAPenqPAAVPAGYERLVAPFCRLGL 189 Agrobacterium tumefaciens
WP_011047981 166 AHYYEYR-HETAl-gDGCMPFGVTSLIQRYRTVRF 198 Ruegeria pomeroyi
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