1O0W,2A11


Conserved Protein Domain Family
RNaseIII

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TIGR02191: RNaseIII 
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ribonuclease III, bacterial
This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing]
Statistics
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PSSM-Id: 274024
Aligned: 45 rows
Threshold Bit Score: 195.115
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1O0W_A        24 FQK-ETG-INF------------KNEELLFRALCHSSYANEQ-NqagrKDve-sNEKLEFLGDAVLELFVCEILYKKYPE 87  Thermotoga mari...
AAO82778       9 LKE-RYG-IVF------------HDVNLLEQAFTHSSYVNEHrY----LKls-dNERLEFLGDAVLELIVSQYLYLKFPE 69  Enterococcus fa...
Q99UN7        20 KMT-ELG-FTY------------QNIDLYQQAFSHSSFINDFnM----NRld-hNERLEFLGDAVLELTVSRYLFDKHPN 80  Staphylococcus ...
AAP31489       6 LFK-RLN-IKP------------KNISLFINALTHSSYANENnA----KHn--nNERLEFLGDSVINFFMASYLYKNNKD 65  Western X phyto...
CAE77107       6 FFE-KYN-IKI------------NNEKLFNEALTHNSYANe--H----KLky-sYQRLEFLGDAILQMYVSRFLFFNYSK 64  Mycoplasma myco...
Q53844        18 FFK-QYH-VFI------------KERQYYLEALTHNSYANe--H----NLsy-tYQRMEFLGDAILAKEISLYLFLSFPD 76  Spiroplasma citri
P47607        14 FDK-KLA-TFLknld-----ifpNNWEFFEKAFIHASYINe--H----EDvsesYDRLEFLGDALIDFVVAKKLFELYPK 80  Mycoplasma geni...
WP_010924967  13 IQK-HFKdLVFelnklginqisqKEKNIFFQAFTHTTFHN---L----YKak-sYEMLEFLGdAILQKNVSEYIFKNTES 83  Mycoplasma pulm...
WP_004025836   9 FLK-QNR-IEP------------KNLSIYLEALTHKSYANe--H----KLtk-nYQRLEFLGdACVEWVISNFIFNYKIK 67  Ureaplasma
WP_010956399   1 MLSdILG-FKP------------SRIAFYELAFRHSSCSLvddE----GYrl-nNERLEFLGdSVLATAISGYLYRQHP- 61  Porphyromonas g...
1O0W_A        88 -AE------V--GDLARVKSAAASEEVLAMVSRKMnL-GKFLFLGKGEEK-TGGRDRDS-ILAD-AFEALLAAIYL-DQG 153 Thermotoga mari...
AAO82778      70 -LP------E--GKLTKMRAAIVREDSLAKFAKEChF-DNYILLGKGEEA-SGGRTRAS-LLCD-LFEAFLGALYL-DQK 135 Enterococcus fa...
Q99UN7        81 -LP------E--GNLTKMRATIVCEPSLVIFANKIgL-NEMILLGKGEEK-TGGRTRPS-LISD-AFEAFIGALYL-DQG 146 Staphylococcus ...
AAP31489      66 -D-------E--GVMTKKRAQAVCVDSLLIYAEEIqL-KKYIYLGKGEKK-R-SVHNYS-IVTD-AFEALFGAIYL-DLG 129 Western X phyto...
CAE77107      65 -LS------E--GELTRLRASTVREETLFRVAKDInL-GALVKLGHGEYI-TKGYEKPS-ILAD-VFEALTAAIYL-DQK 130 Mycoplasma myco...
Q53844        77 -KN------E--GEITNLRSKIVREGTLAELVRRMnW-APFLLLGKGEIK-TKGYEKNR-ILAD-IYESMIAALYL-DLG 142 Spiroplasma citri
P47607        81 -YN------E--GLLTRTKIEIVKGENLNRIGMELkL-GDFVKLSNGAEL-T-----EN-TVGD-VLEALVGAIYE-DMG 141 Mycoplasma geni...
WP_010924967  84 -NKi----nP--GTATLIRSKLVNKTCLSNLAKELkLdK-FLLLPKGQEE---LVKNEK-VLSd-LFESLCAAIYI-TKG 149 Mycoplasma pulm...
WP_004025836  68 dNEkmrsldE--GEMTRARSNMVRSEILSYAAKdLgL-TdFLMIGVGLEQdQSAR--ME-KIYEdIFEAFIGAVAQdQ-G 140 Ureaplasma
WP_010956399  62 -HW------DegD-MSQRRSAIVKRQINNVVAKKLrLdRFLIVRG-------EISQMSSdIMGN-TLEALIGAIYLdK-G 124 Porphyromonas g...
1O0W_A       154 YE-KIKELFEQEFEFYIEkImK-GE--MLFd-yKTALQEIVQSEHKVPPEY--------------ILVR-TEK-NDGDR- 211 Thermotoga mari...
AAO82778     136 VG-AAKKFIEDVIFPKIDaG---AFs-HEMd-hKTQLQEVLQRKGDVSIEY--------------RLIK-EEG-PAHDR- 192 Enterococcus fa...
Q99UN7       147 LD-IVWKFAEKVIFPHVEqN---ELl-GVVd-fKTQFQEYVHQQNKGDVTY--------------NLIK-EEG-PAHHR- 203 Staphylococcus ...
AAP31489     130 FK-QAQKTFYQVVLPCLNk-----Ii-NIId-fKTQLQELVQTKKQ-NITY--------------KIIS-EKG-LAHEK- 183 Western X phyto...
CAE77107     131 ED-GLVTWLGQTLFKYIKdS-N-FIn-DTKd-fKSELQELLQSEKRSDLKY--------------IIEK-EDF-FANENk 189 Mycoplasma myco...
Q53844       143 ED-VVRTFINNTLIRMVSnP-G-FFd-KIRd-yKTELQEFLQAGDARTLEY--------------KLIK-ESQ-PLEGNr 201 Spiroplasma citri
P47607       142 MK-KATEFVEKYIFERTFsEi------LKYd-fFSLFQEQKLPEPRVRVSLtsnnlvlsiieldgDIIW-SQA-IPNNK- 210 Mycoplasma geni...
WP_010924967 150 -NdVLEVFLQKYLYPKMQd--L-EYk-TLKn-aKGRFQEIFQATTKSAGKY--------------VISFdEEK-K----- 203 Mycoplasma pulm...
WP_004025836 141 IK-KVSLILEKTLIKYFRe----GQi-NYQkdyKTIFQEQAQRINKKPIMY--------------KLVR-NEGdKK---- 195 Ureaplasma
WP_010956399 125 YQ-AAEKFVLTRFIPVFHeL-EdSLtdTTTn-yKSLLLEWAQ-KHHLNLEF--------------RLIS-EPK-RAHG-- 182 Porphyromonas g...
1O0W_A       212 -IFVVEVRVN-GKTIATGKGRTKKEAEKEAAR-IAYEKL 247 Thermotoga maritima
AAO82778     193 -TFFTEVYMN-GELIGLGQGKSKKLAEQDAAE-RALKSI 228 Enterococcus faecalis V583
Q99UN7       204 -LFTSEVILQ-GEAIAEGKGKTKKESEQRAAE-SAYKQL 239 Staphylococcus aureus subsp. aureus N315
AAP31489     184 -EFVSEVYLG-KEWLGKGNGKTKKAAEQQAAK-KALAKI 219 Western X phytoplasma
CAE77107     190 iLYTVSVNLN-GQKFGVGKGFSKQEAEQNAAS-DCLSKL 226 Mycoplasma mycoides subsp. mycoides SC str. PG1
Q53844       202 vLYTVVAEIG-GIRYGEGCGYTHKEAEQLAAR-DALQKL 238 Spiroplasma citri
P47607       211 -NYDDKSVLE-HNAMASFTSFLKSSKGSHFFS-DLKEKI 246 Mycoplasma genitalium G37
WP_010924967 204 -IYEAKLIHS-ETIYGIGYGKNKKEAEQNAAEdALKKLV 240 Mycoplasma pulmonis
WP_004025836 196 ---EVHLVWNd-LIYGIGIASTRKEAEILAAK-NAILKL 229 Ureaplasma
WP_010956399 183 -HFNYAV-FVdGHRIGSGIGMNKKEAHQNAAHd-ALEKL 218 Porphyromonas gingivalis
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