3IYD


Conserved Protein Domain Family
rpoA

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TIGR02027: rpoA 
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DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type
This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins. [Transcription, DNA-dependent RNA polymerase]
Statistics
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PSSM-Id: 273934
Aligned: 18 rows
Threshold Bit Score: 371.989
Created: 8-Oct-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3IYD_A        23 HAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VLHEYSTKEGVQEDILEILLNLKGLA---- 89  Escherichia col...
P12073        29 YGRFILSPLRKGQADTVGIALRRALLGEIEGTCITRAKFGS---------VPHEYSTIAGIEESVQEILLNLKEIV---- 95  bread wheat
Q50295        22 YGIFEVGPLESGFVITIGNAMRRVLLSCIPGASVFALSISG---------AKQEFAAVEGMKEDVTEVVLNFKQLVvkis 92  Mycoplasma pneu...
Q9PQN4        21 RTVVKIAPLEIGFGDTLGNALRRICLSSIPGASMFAVKFGG---------YSHEFQPYEGVKEDITHIILNLKNLAikid 91  Ureaplasma parv...
P56001        23 RVKISLAPFEFGYAVTLAHPIRRLLLLSSVGYAPVGLKIEG---------VHHEFDSLRGVTEDVSLFIMNLKNIRfiak 93  Helicobacter py...
Q8KAJ8        22 FGRFIAQPLERGYGVTLGNAMRRVLLASLPGTAITGIKIDG---------VFHEFSTIDGVREDVPEIVLNLKKVR---- 88  Chlorobium tepi...
O83242        27 YGKFTASPFETGFGTTVGNCLRRVLLSSIQGYAVTGVRITSfdadgvahfISSEFEQIPHVREDTLEILNNFKRLR---- 102 Treponema palli...
O51455        27 YGKFTIYPFERGFGITIGNTLRRVLLSSIEGYAITAMRVQSnnkdssskvVSSEFDLIPGVSEDTLEIIANIKNIH---- 102 Borrelia burgdo...
WP_004583572  21 iAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIEG---------VEHEFATIPGVLEDVTNIILNLKQVR---- 87  Porphyromonas g...
WP_023041516  22 KGQFIVEPLYRGYGNTLGNALRRVLLSSIPGAAIKGMRIEG---------VLSEFTVMDGVKEAVTEIILNVKEIV---- 88  Fusobacterium n...
3IYD_A        90 --VRVQGKDEv-------iLTLNKSGIGPVTAADIT-HDGDVEIVKPQHVICHLTDEnASISMRIKVQRGRGYVPASTri 159 Escherichia col...
P12073        96 --LRSNLYGVr-------dASICVKGPRYITAQDII-LPPSVEIVDTAQPIANLTEP-IDFCIDLQIKRDRGYQTELR-- 162 bread wheat
Q50295        93 dlLFEDGEMVepplerwplLTVTAEKAGPVYAKDLEcPAG-FEVVNKDLYLFSLQTD-KKVTVNVYVKQGRGFVTFLE-- 168 Mycoplasma pneu...
Q9PQN4        92 elIYSEDYFNnllidkwpkMKINFKGPGVITAKDIVcPVG-FEIVNQDLYIAEVTKP-IDVEIEIFAKTGRGRVDFNT-- 167 Ureaplasma parv...
P56001        94 alVGQDSSLEnqs----vvVDYSFKGPMELRARDLNsEQ--IEIVNPEMPLATINED-AQLNFSLIIYKGMGYVPSEN-- 164 Helicobacter py...
Q8KAJ8        89 --FKSNCKRSc-------kTTLTLAGPKDFLAGDIVaQEGEFEVLNKDLHIATINSE-ATVTIDIYIGRGRGYVPAEE-- 156 Chlorobium tepi...
O83242       103 --FLLPQGAEss------tFTYEFRG-AVSLTGKDFaKKFQLEVLSQDLLIMEMMDG-AHVEVELHVEFGRGYVPAES-- 170 Treponema palli...
O51455       103 --LKLGEGEQrk------tISFSVSGKDTNVLKASHfERDGVEVFNKDLVIATLSHD-VNLDLEFQINYGRGYVSSEQ-- 171 Borrelia burgdo...
WP_004583572  88 --FKQIVPNAdv-----ekATIVISNSEVFRAGDLNaQLSNFEVLNSNLVICHLDKS-ATLTMEFSINKGRGYVSAEE-- 157 Porphyromonas g...
WP_023041516  89 --VKAESSGEr-------rMSLSIKGPKVVKAADIVaDIG-LEIVNPEQVICTVTTD-RTLDIEFIVDTGEGFVVSEE-- 155 Fusobacterium n...
3IYD_A       160 hSEEDERPigrLLVDACYSPVERIAYNVEAArVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239 Escherichia col...
P12073       163 -KNYQDGS---YPIDAVSMPVRNVNYSIFSC-GNGNEKHEILFLEIWTNGSLTPKEALYEASRNLIDLFLPFLHAEEEGA 237 bread wheat
Q50295       169 -NREMINSlgiIATDSNFSPVLHCGYEVQELkTSKQKITDHLTFKIATNGAISAVDAFAMAAKILIEHLNPIVNVNESIK 247 Mycoplasma pneu...
Q9PQN4       168 -NKDFVSTlhiIATDSNYSPVLHYAYNVEMIkDSKSSMSEILTIDIATNGTISGSEAIAIAAKIMQAHLEPIVNIDKTIN 246 Ureaplasma parv...
P56001       165 -T-RELMPegyMPLDGSFTPIKKVVYEIENVlVEGDPNYEKIIFDIETDGQIDPYKAFLSAVKVMSKQLGVFGER--PIA 240 Helicobacter py...
Q8KAJ8       157 -NRSDGMPigfIAIDSIYTPIKNVKLTVENTrVGQKTDYEKMILDVETDGSITPDDAISLAGKIINDHITFFANFSPTEE 235 Chlorobium tepi...
O83242       171 -HDRYADLvgvIPVDAIFSPVLRVRYDIQSCrVGQRGDYDQLSLEVWTDGTVRPEDAIAEAAKIIKEHFTVFVNFDETAL 249 Treponema palli...
O51455       172 -NSKYLEEvnvIALDSIFSPIEKVSYSVEDTrVGQRSDYDKLVMEIWTTGVISAKDAIKKAASIVREFLFPLVDFEDnv- 249 Borrelia burgdo...
WP_004583572 158 -NRAEHNElstIAIDSIYTPIRNVKYAVENFrVEQKTDYEKLLMEVTTDGSIRPVDALREAAQILISHFSLFAENKIAIE 236 Porphyromonas g...
WP_023041516 156 -IDKKDWPvdyIAVDAIYTPIRKVSYEIQDTmFGRMTDFDKLTLNVETDGSIEIRDALSYAVELLKLHLDPFLEIGNKME 234 Fusobacterium n...
3IYD_A       240 -----PEVKEEKP----------EFDP----ILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 300 Escherichia col...
P12073       238 sfeenKNRFTPPLftfqkrltnlKKNKkgipLNCIFIDQLELTSRTYNCLKRANIHTLLDLLSKTEEDLLRIDSFRMEDR 317 bread wheat
Q50295       248 alniiQEKAEERR------------VR----SFAKQIEELDFTVRTFNCLKRSGIHTLQELLSKSLADIREIRNLGKKSE 311 Mycoplasma pneu...
Q9PQN4       247 emiimREREEEEK------------RQ----NASISIDDLDLTVRAYNALKQSGINTTAELIELTKSQLEKIKNLGRKSV 310 Ureaplasma parv...
P56001       241 nteysGDYAQRD------------DAK----DLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSY 304 Helicobacter py...
Q8KAJ8       236 efseeEYKQLDDEf--------eSMRK----LLQTKIEDLDLSVRSHNCLRLAEIDSLGDLVSRREEELLNYKNFGKKSL 303 Chlorobium tepi...
O83242       250 dl----eDEPEEDd--------pAVLE----LLNTKIADVDFSVRARNCLLTMGIKTLGELTRISEQTLANTRNVGKKSL 313 Treponema palli...
O51455       250 ------nTSFEKSk--------sESSN----LLDMSIEKLNLSVRSLNCLAKENVRTLGELISKNAEELSKARNFGKKSL 311 Borrelia burgdo...
WP_004583572 237 yvdivDTDEFDEDs--------lHMRQ----LLKSKLSGLDLSVRALNCLNAAGVDTLGDLVSLSRSDLMKIRNFGKKSL 304 Porphyromonas g...
WP_023041516 235 nlrddIEEMIEEPmdi-----qvIDDK----SHDMKIEELDLTVRSFNCLKKAGIEEVSQLASLSLNELLKIKNLGKKSL 305 Fusobacterium n...
3IYD_A       301 TEIKDVLAS-RGLSLGMR 317 Escherichia coli K-12
P12073       318 KHIWDTLEKhLPIDLLKN 335 bread wheat
Q50295       312 REIIKKVHE-LGLKLRS- 327 Mycoplasma pneumoniae M129
Q9PQN4       311 TEIIQKLTE-RSLELKKD 327 Ureaplasma parvum serovar 3 str. ATCC 700970
P56001       305 DEIAEKLND-LGYPVGTE 321 Helicobacter pylori 26695
Q8KAJ8       304 TELKEQLEK-FNLKFGMD 320 Chlorobium tepidum TLS
O83242       314 SEIQGKLQE-YNLRLGMA 330 Treponema pallidum subsp. pallidum str. Nichols
O51455       312 EEIIEKLGS-YRLYLGMS 328 Borrelia burgdorferi B31
WP_004583572 305 TELDELLAT-LNLSFGMD 321 Porphyromonas gingivalis
WP_023041516 306 DEILEKMKD-LGYDLEKN 322 Fusobacterium nucleatum
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